Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04519 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 43.46 | 72.54 |
| Bra011991.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 43.04 | 71.83 |
| PGSC0003DMT400001221 | Potato | vacuole | 28.27 | 35.83 |
| AT4G09100.1 | Thale cress | extracellular | 17.72 | 31.82 |
| Solyc11g066510.1.1 | Tomato | nucleus | 29.11 | 29.24 |
| AT4G40070.1 | Thale cress | extracellular, golgi, mitochondrion, plastid | 24.89 | 18.27 |
| AT2G34990.2 | Thale cress | plasma membrane | 21.94 | 16.05 |
| AT1G35330.1 | Thale cress | endoplasmic reticulum | 21.1 | 15.24 |
| AT4G09110.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 19.41 | 15.23 |
| AT3G05200.1 | Thale cress | plasma membrane | 25.32 | 15.08 |
| AT2G35000.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 23.63 | 14.81 |
| AT5G27420.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 22.78 | 14.67 |
| AT2G35420.1 | Thale cress | plasma membrane, plastid | 15.61 | 14.57 |
| AT5G46650.1 | Thale cress | plasma membrane | 17.3 | 14.19 |
| AT1G72200.1 | Thale cress | plasma membrane | 24.05 | 14.11 |
| AT4G09120.1 | Thale cress | plasma membrane | 18.99 | 13.04 |
| AT5G05810.1 | Thale cress | endoplasmic reticulum, golgi | 21.94 | 12.78 |
| AT4G17920.1 | Thale cress | plasma membrane | 15.19 | 12.46 |
| AT1G22500.1 | Thale cress | plasma membrane | 19.83 | 12.34 |
| AT4G09130.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 18.57 | 12.32 |
| AT2G20030.1 | Thale cress | endoplasmic reticulum, plasma membrane | 18.14 | 11.03 |
| AT4G28890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 17.3 | 9.49 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | EntrezGene:817338 | UniProt:A0A178VQG7 | ProteinID:AAD21508.1 | ProteinID:AEC08062.1 |
| EMBL:AK118539 | ArrayExpress:AT2G27940 | EnsemblPlantsGene:AT2G27940 | RefSeq:AT2G27940 | TAIR:AT2G27940 | RefSeq:AT2G27940-TAIR-G |
| EnsemblPlants:AT2G27940.1 | TAIR:AT2G27940.1 | Unigene:At.38697 | EMBL:BT005256 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0043161 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_180361.1 |
| ProteinID:OAP07132.1 | PFAM:PF13639 | PO:PO:0007115 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009025 |
| PO:PO:0009030 | PO:PO:0020137 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF274 | UniProt:Q9SJJ7 |
| SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI000000C5AD | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
ATL57RING-H2 finger protein ATL57 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ7]
Coordinates
chr2:+:11897942..11898867
Molecular Weight (calculated)
26480.5 Da
IEP (calculated)
7.030
GRAVY (calculated)
-0.282
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: METKHLRKLL QLYQACGGEQ ELTKTVQNVT SSPLTPTPPP QPPSALDSTM ALTIFILLVA LFFMGFFSVY FRHFADSSSS TVDISSMPRT RSSRMSPRRL
101: STSVVVSRPY SFRRGLDSQA VRSLPVYRYT KAAKQRNEDC VICLSDFEEG ETVKVIPHCG HVFHVDCVDT WLSSYVTCPL CRSNQLFSDK DLGMQEPPDQ
201: DSAEEHDTCD GVDTCVRRCS SCSSLGQRTG LERSLSL
101: STSVVVSRPY SFRRGLDSQA VRSLPVYRYT KAAKQRNEDC VICLSDFEEG ETVKVIPHCG HVFHVDCVDT WLSSYVTCPL CRSNQLFSDK DLGMQEPPDQ
201: DSAEEHDTCD GVDTCVRRCS SCSSLGQRTG LERSLSL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.