Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- plasma membrane 3
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY63052 | Canola | golgi, mitochondrion, plasma membrane, plastid | 82.01 | 82.58 |
| Bra025008.1-P | Field mustard | plastid | 81.66 | 82.23 |
| CDX77681 | Canola | golgi, mitochondrion, plasma membrane, plastid | 81.66 | 82.23 |
| CDY03202 | Canola | plasma membrane | 77.51 | 79.72 |
| CDY35174 | Canola | plasma membrane | 77.16 | 79.36 |
| Bra017535.1-P | Field mustard | nucleus, plasma membrane, plastid | 76.82 | 79.0 |
| AT4G17920.1 | Thale cress | plasma membrane | 60.55 | 60.55 |
| Solyc08g005110.1.1 | Tomato | plastid | 39.79 | 41.97 |
| KRH74402 | Soybean | endoplasmic reticulum, nucleus, plasma membrane, plastid | 34.95 | 35.07 |
| KRH75596 | Soybean | endoplasmic reticulum, plasma membrane, plastid | 37.37 | 35.06 |
| Solyc08g076800.2.1 | Tomato | plastid | 32.53 | 33.22 |
| AT4G09100.1 | Thale cress | extracellular | 14.88 | 32.58 |
| KRH45424 | Soybean | endoplasmic reticulum, plasma membrane | 34.6 | 32.36 |
| AT4G40070.1 | Thale cress | extracellular, golgi, mitochondrion, plastid | 26.3 | 23.53 |
| AT2G34990.2 | Thale cress | plasma membrane | 24.22 | 21.6 |
| AT5G27420.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 26.99 | 21.2 |
| AT3G05200.1 | Thale cress | plasma membrane | 28.72 | 20.85 |
| AT1G35330.1 | Thale cress | endoplasmic reticulum | 23.53 | 20.73 |
| AT2G35420.1 | Thale cress | plasma membrane, plastid | 17.99 | 20.47 |
| AT2G35000.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 25.26 | 19.31 |
| AT4G09120.1 | Thale cress | plasma membrane | 22.49 | 18.84 |
| AT4G09130.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 23.18 | 18.77 |
| AT1G72200.1 | Thale cress | plasma membrane | 25.61 | 18.32 |
| AT1G22500.1 | Thale cress | plasma membrane | 23.18 | 17.59 |
| AT2G27940.1 | Thale cress | plasma membrane | 14.19 | 17.3 |
| AT4G09110.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 17.99 | 17.22 |
| AT2G20030.1 | Thale cress | endoplasmic reticulum, plasma membrane | 22.49 | 16.67 |
| AT5G05810.1 | Thale cress | endoplasmic reticulum, golgi | 19.72 | 14.0 |
| AT4G28890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 20.07 | 13.43 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | EntrezGene:834708 | ProteinID:AED95410.1 | ArrayExpress:AT5G46650 | EnsemblPlantsGene:AT5G46650 |
| RefSeq:AT5G46650 | TAIR:AT5G46650 | RefSeq:AT5G46650-TAIR-G | EnsemblPlants:AT5G46650.1 | TAIR:AT5G46650.1 | ProteinID:BAB08909.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR001841 |
| InterPro:IPR013083 | RefSeq:NP_199477.1 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF305 |
| UniProt:Q9FIR0 | SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI00000AB899 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
ATL30RING-H2 finger protein ATL30 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR0]
Coordinates
chr5:+:18930246..18931312
Molecular Weight (calculated)
33433.7 Da
IEP (calculated)
6.316
GRAVY (calculated)
-0.550
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIAKPINQN TTVPYPPQHY SKPPLVIILT VILLVVFFIG FFAIYFCKCF YHTLTEAWNH HYHNGLPENQ IQAQQEPVQP PVNPGLEPHI IQSYPLFPFS
101: SVKDLREDKY GLECAICLLE FEEEHILLRL LTTCYHVFHQ ECIDQWLESN KTCPVCRRNL DPNAPENIKE LIIEVIQENA HENRDQEQTS TSNEVMLSRQ
201: SSGNNERKIE TLPDKFSRSK TTGHSIVRNK PEEEDRYTLR LPDHVKIKVT RRHNNNQTES CISFGELVRN REGRFGEVSG QSLVPESGS
101: SVKDLREDKY GLECAICLLE FEEEHILLRL LTTCYHVFHQ ECIDQWLESN KTCPVCRRNL DPNAPENIKE LIIEVIQENA HENRDQEQTS TSNEVMLSRQ
201: SSGNNERKIE TLPDKFSRSK TTGHSIVRNK PEEEDRYTLR LPDHVKIKVT RRHNNNQTES CISFGELVRN REGRFGEVSG QSLVPESGS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.