Factsheet for Bra017535.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35174	Canola	plasma membrane	99.64	99.64
CDY03202	Canola	plasma membrane	95.37	95.37
Bra025008.1-P	Field mustard	plastid	81.14	79.44
AT5G46650.1	Thale cress	plasma membrane	79.0	76.82
Bra013268.1-P	Field mustard	plasma membrane	56.94	54.42
Solyc08g005110.1.1	Tomato	plastid	39.86	40.88
KRH74402	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	35.23	34.38
KRH75596	Soybean	endoplasmic reticulum, plasma membrane, plastid	35.59	32.47
Solyc08g076800.2.1	Tomato	plastid	32.03	31.8
KRH45424	Soybean	endoplasmic reticulum, plasma membrane	33.45	30.42
Bra038386.1-P	Field mustard	extracellular	12.46	25.36
Bra012630.1-P	Field mustard	nucleus	54.09	24.56
Bra010641.1-P	Field mustard	extracellular, golgi	26.69	24.35
Bra009960.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	25.62	23.68
Bra009962.1-P	Field mustard	mitochondrion, plastid	23.13	22.73
Bra011991.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	11.03	21.83
Bra036631.1-P	Field mustard	plasma membrane	26.69	21.43
Bra020591.1-P	Field mustard	plasma membrane	28.11	20.73
Bra040642.1-P	Field mustard	plasma membrane	28.11	20.47
Bra005343.1-P	Field mustard	plastid	19.22	19.35
Bra005375.1-P	Field mustard	cytosol, nucleus, plastid	21.35	19.17
Bra005374.1-P	Field mustard	plasma membrane, plastid, vacuole	24.91	19.02
Bra000673.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	22.42	18.58
Bra003887.1-P	Field mustard	endoplasmic reticulum, plasma membrane	23.49	18.38
Bra039454.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	24.91	18.13
Bra028075.1-P	Field mustard	plasma membrane	22.06	17.56
Bra008016.1-P	Field mustard	plasma membrane	24.91	17.37
Bra008015.1-P	Field mustard	plasma membrane	23.84	16.92
Bra012330.1-P	Field mustard	golgi, plasma membrane	20.64	16.86
Bra040855.1-P	Field mustard	golgi, plasma membrane	22.42	16.76
Bra017320.1-P	Field mustard	extracellular, nucleus, plasma membrane	18.86	15.77
Bra009136.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	20.28	14.11
Bra001139.1-P	Field mustard	extracellular, golgi, plasma membrane	17.08	13.79
Bra011068.1-P	Field mustard	endoplasmic reticulum, plasma membrane	19.93	13.43
Bra024178.1-P	Field mustard	endoplasmic reticulum, plasma membrane	19.93	13.33
Bra010349.1-P	Field mustard	endoplasmic reticulum, plasma membrane	18.51	12.38

Protein Annotations

EnsemblPlants:Bra017535.1	EnsemblPlants:Bra017535.1-P	EnsemblPlantsGene:Bra017535	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155
PANTHER:PTHR14155:SF305	PFAM:PF13639	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
TMHMM:TMhelix	UniParc:UPI00025424BA	UniProt:M4DM04	MapMan:19.2.2.1.5.3.3	:	:

Description

AT5G46650 (E=5e-116) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA09:-:16154490..16155335

Molecular Weight (calculated)

32260.5 Da

IEP (calculated)

6.637

GRAVY (calculated)

-0.565

Length

281 amino acids

Sequence
(BLAST)

001: MLPKPIGPNT TLESQPPHHY NNPQLVVILL LVLFIGFFAL CCCKCFFHTL SKAWDRLHRN GPPEDQIQSQ PEIDGQPPVN PGLEPQIIQS FPLFPFSSVK
101: NLREDKHGLE CAICLLEFEE EHVLLRLLTT CYHVFHQECI DRWLESNKTC PVCRRNLDPT ASENIKELII EVIHENSNGN QDQTSTSNEV LRSRQSKEVK
201: MESLPDKFSR SKTTGHSIVR NKPAEEDRFT LRLPDHVKIK VTRRHNNNQT ESCISFGELM RNREGRFGEL SGQSLVPESE N

Best Arabidopsis Sequence Match ( AT5G46650.1 )
(BLAST)

001: MPIAKPINQN TTVPYPPQHY SKPPLVIILT VILLVVFFIG FFAIYFCKCF YHTLTEAWNH HYHNGLPENQ IQAQQEPVQP PVNPGLEPHI IQSYPLFPFS
101: SVKDLREDKY GLECAICLLE FEEEHILLRL LTTCYHVFHQ ECIDQWLESN KTCPVCRRNL DPNAPENIKE LIIEVIQENA HENRDQEQTS TSNEVMLSRQ
201: SSGNNERKIE TLPDKFSRSK TTGHSIVRNK PEEEDRYTLR LPDHVKIKVT RRHNNNQTES CISFGELVRN REGRFGEVSG QSLVPESGS

Arabidopsis Description

ATL30RING-H2 finger protein ATL30 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.