Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH45424 | Soybean | endoplasmic reticulum, plasma membrane | 77.27 | 77.02 |
| KRH74402 | Soybean | endoplasmic reticulum, nucleus, plasma membrane, plastid | 46.43 | 49.65 |
| AT4G17920.1 | Thale cress | plasma membrane | 37.01 | 39.45 |
| Bra013268.1-P | Field mustard | plasma membrane | 36.69 | 38.44 |
| CDX78812 | Canola | plasma membrane | 36.69 | 38.44 |
| CDY44502 | Canola | plasma membrane | 36.69 | 38.44 |
| CDX77681 | Canola | golgi, mitochondrion, plasma membrane, plastid | 35.71 | 38.33 |
| CDY01502 | Canola | plasma membrane | 36.69 | 38.05 |
| Bra025008.1-P | Field mustard | plastid | 35.39 | 37.98 |
| CDY63052 | Canola | golgi, mitochondrion, plasma membrane, plastid | 35.39 | 37.98 |
| AT5G46650.1 | Thale cress | plasma membrane | 35.06 | 37.37 |
| Bra017535.1-P | Field mustard | nucleus, plasma membrane, plastid | 32.47 | 35.59 |
| CDY03202 | Canola | plasma membrane | 32.47 | 35.59 |
| CDY35174 | Canola | plasma membrane | 32.47 | 35.59 |
| Solyc08g005110.1.1 | Tomato | plastid | 30.52 | 34.31 |
| Solyc08g076800.2.1 | Tomato | plastid | 29.55 | 32.16 |
| KRH53320 | Soybean | mitochondrion | 9.42 | 27.36 |
| KRH14610 | Soybean | endoplasmic reticulum, nucleus, plastid | 13.64 | 23.86 |
| KRG92822 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 25.65 | 23.51 |
| KRH16796 | Soybean | cytosol, endoplasmic reticulum, plasma membrane, plastid | 28.57 | 23.22 |
| KRH33975 | Soybean | golgi, plasma membrane, vacuole | 26.95 | 23.12 |
| KRH72413 | Soybean | cytosol, golgi, vacuole | 27.6 | 22.73 |
| KRH52998 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 24.35 | 22.46 |
| KRH68588 | Soybean | plasma membrane | 26.62 | 22.4 |
| KRH62285 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 24.68 | 22.35 |
| KRH09080 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 25.0 | 22.19 |
| KRG96857 | Soybean | vacuole | 26.95 | 22.13 |
| KRH38505 | Soybean | plasma membrane, vacuole | 20.45 | 22.11 |
| KRH13267 | Soybean | plasma membrane | 11.04 | 20.86 |
| KRH38504 | Soybean | plasma membrane | 24.03 | 20.44 |
| KRH31340 | Soybean | endoplasmic reticulum, plasma membrane | 14.61 | 20.0 |
| KRH16846 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 9.74 | 18.99 |
| KRH62061 | Soybean | plastid | 16.23 | 18.45 |
| Bra012630.1-P | Field mustard | nucleus | 36.04 | 17.93 |
| CDX90435 | Canola | nucleus | 35.71 | 17.92 |
| KRH72412 | Soybean | nucleus, plasma membrane, plastid | 22.08 | 17.62 |
| KRH16794 | Soybean | plasma membrane | 22.4 | 17.6 |
| KRH16295 | Soybean | plasma membrane | 21.43 | 16.71 |
| KRH70712 | Soybean | endoplasmic reticulum, extracellular, vacuole | 11.04 | 15.96 |
| KRH39345 | Soybean | endoplasmic reticulum, vacuole | 21.43 | 15.75 |
| KRH76331 | Soybean | endoplasmic reticulum | 21.75 | 15.73 |
| KRH52730 | Soybean | golgi, plasma membrane, vacuole | 20.45 | 15.37 |
| KRH62179 | Soybean | plasma membrane | 14.94 | 13.69 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | EMBL:ACUP02000404 | EnsemblPlantsGene:GLYMA_01G095300 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 |
| GO:GO:0061630 | UniProt:I1J6A4 | InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlants:KRH75596 | ProteinID:KRH75596 |
| ProteinID:KRH75596.1 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF305 | SMART:SM00184 |
| SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI000295F46E | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
hypothetical protein
Coordinates
chr1:+:29549287..29550213
Molecular Weight (calculated)
34364.6 Da
IEP (calculated)
6.545
GRAVY (calculated)
-0.457
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSPAAAPY NTPPALIAFT LTVLVLCFVA FSIVYMCKYC FSSVIHTWAF QRTPSGSLIR LTPHRSPPRG LDPDLLQVFP TFPYSSVKDL RKDQKYGLEC
101: AICLLEFEDD NVLRLLTLCC HVFHQDCIDL WLRSHKTCPV CRRDLDSPPP DETQKANEGV VVMSTSGEIR IDVTEGQDCG GGDDNDGNPR QEHEREHEHE
201: HGYGNHEVMI HQQGEQMFAR SHSTGHSIVL IRGEGDEGKD DDKYTLRLPE HVLRVRHNNK HNCTRSCASY KDIAKLVAPP AAAAPCSNCG FVQPVPPSST
301: SSPDHTRK
101: AICLLEFEDD NVLRLLTLCC HVFHQDCIDL WLRSHKTCPV CRRDLDSPPP DETQKANEGV VVMSTSGEIR IDVTEGQDCG GGDDNDGNPR QEHEREHEHE
201: HGYGNHEVMI HQQGEQMFAR SHSTGHSIVL IRGEGDEGKD DDKYTLRLPE HVLRVRHNNK HNCTRSCASY KDIAKLVAPP AAAAPCSNCG FVQPVPPSST
301: SSPDHTRK
001: MSTIIPSPLA PQPPQQHYVT PPLTVILTVI LLVFFFIGFF TLYFCKCFLD TMVQAWRLHH GGDTVSDNPL QQPEAPPVNP GLELRIINSF PTFPYSSVKD
101: LREEKYGLEC AICLLEFDGD HVLRLLTTCY HVFHQECIDL WFESHRTCPV CRRDLDPPPP PENTKPTVDE MIIDVIQETS DDEEDDHHRQ QTTTQIDTWP
201: SSGQTSSIKK EQNLPEKFSR SHSTGHSIVR NKPEEEDKYT LRLPEHVKIK VTRGHSQTES CVTFAELIRN RGYDHRRFGE VSGQTQSKN
101: LREEKYGLEC AICLLEFDGD HVLRLLTTCY HVFHQECIDL WFESHRTCPV CRRDLDPPPP PENTKPTVDE MIIDVIQETS DDEEDDHHRQ QTTTQIDTWP
201: SSGQTSSIKK EQNLPEKFSR SHSTGHSIVR NKPEEEDKYT LRLPEHVKIK VTRGHSQTES CVTFAELIRN RGYDHRRFGE VSGQTQSKN
Arabidopsis Description
ATL29RING-H2 finger protein ATL29 [Source:UniProtKB/Swiss-Prot;Acc:O49691]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.