CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38504	Soybean	plasma membrane	80.69	77.35
KRG92822	Soybean	endoplasmic reticulum, plasma membrane, vacuole	29.39	30.36
KRH33975	Soybean	golgi, plasma membrane, vacuole	30.84	29.8
KRH68588	Soybean	plasma membrane	30.84	29.23
KRG96857	Soybean	vacuole	31.12	28.8
KRH38505	Soybean	plasma membrane, vacuole	22.77	27.72
KRH53320	Soybean	mitochondrion	8.36	27.36
KRH72413	Soybean	cytosol, golgi, vacuole	27.67	25.67
KRH52998	Soybean	endoplasmic reticulum, extracellular, plasma membrane	24.5	25.45
KRH74402	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	21.04	25.35
KRH62285	Soybean	endoplasmic reticulum, plasma membrane, vacuole	24.78	25.29
KRH75596	Soybean	endoplasmic reticulum, plasma membrane, plastid	22.19	25.0
KRH14610	Soybean	endoplasmic reticulum, nucleus, plastid	12.68	25.0
KRH31340	Soybean	endoplasmic reticulum, plasma membrane	15.56	24.0
KRH16796	Soybean	cytosol, endoplasmic reticulum, plasma membrane, plastid	25.94	23.75
KRH45424	Soybean	endoplasmic reticulum, plasma membrane	20.75	23.3
KRH16794	Soybean	plasma membrane	26.22	23.21
KRH72412	Soybean	nucleus, plasma membrane, plastid	25.65	23.06
KRH13267	Soybean	plasma membrane	10.09	21.47
KRH70712	Soybean	endoplasmic reticulum, extracellular, vacuole	10.95	17.84
KRH16846	Soybean	endoplasmic reticulum, extracellular, plasma membrane	7.2	15.82
KRH62061	Soybean	plastid	12.1	15.5
KRH16295	Soybean	plasma membrane	16.71	14.68
KRH52730	Soybean	golgi, plasma membrane, vacuole	16.71	14.15
KRH62179	Soybean	plasma membrane	13.54	13.99
KRH39345	Soybean	endoplasmic reticulum, vacuole	16.71	13.84
KRH76331	Soybean	endoplasmic reticulum	16.43	13.38

Protein Annotations

EntrezGene:100809056	MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	EMBL:ACUP02010270	EnsemblPlantsGene:GLYMA_16G194600	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:K7MII0	EnsemblPlants:KRH09080
ProteinID:KRH09080	ProteinID:KRH09080.1	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF208
SMART:SM00184	SUPFAM:SSF57850	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000233AEFA	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:35672589..35674021

Molecular Weight (calculated)

38462.6 Da

IEP (calculated)

6.742

GRAVY (calculated)

-0.193

Length

347 amino acids

Sequence
(BLAST)

001: MLEFNAFHFH LTHIIFSLIF NLSKAQSSME PVPAYITHHS WEPSVAITVA AIIFALLLMA IISVYLRRCA QSHIIITTTT LPCSCSQGIN KDLLNTFPTL
101: FYSNIKDLNK ANQTLECAVC LTDFTHKDSL RLLPKCNHVF HPHCIDSWLT SHVTCPVCRA NLSQESSCHV SITVPPHGEE GSLGNMTTTT TTTEATQVEQ
201: RPSNDINQDC VGDPTSTSDT TKIIYISEEQ HSSSELACEV ELGSKTNVRN STITNIGDGV VASERNLSRS NSTGHSLVEE QGKGVERYTL RLPEDVRRYI
301: LVNHGRTVQR SASVKGGCWS DSEESYVGKR VEKRWVICTP PFVAQHG

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.