Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 5
- vacuole 4
- plasma membrane 7
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039454.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 80.9 | 83.42 |
| CDY18787 | Canola | plasma membrane | 80.15 | 82.43 |
| CDY53236 | Canola | plasma membrane | 71.86 | 82.42 |
| Bra040642.1-P | Field mustard | plasma membrane | 79.65 | 82.12 |
| CDY27787 | Canola | extracellular, plasma membrane, vacuole | 61.56 | 81.4 |
| CDY05145 | Canola | plasma membrane | 60.3 | 80.81 |
| Bra001139.1-P | Field mustard | extracellular, golgi, plasma membrane | 69.85 | 79.89 |
| CDY70750 | Canola | extracellular, mitochondrion, nucleus | 54.77 | 71.95 |
| AT5G27420.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 62.31 | 67.39 |
| KRG92822 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 39.95 | 47.32 |
| KRH33975 | Soybean | golgi, plasma membrane, vacuole | 40.95 | 45.4 |
| AT4G09100.1 | Thale cress | extracellular | 14.07 | 42.42 |
| KRG96857 | Soybean | vacuole | 39.95 | 42.4 |
| KRH68588 | Soybean | plasma membrane | 37.94 | 41.26 |
| GSMUA_Achr5P17910_001 | Banana | golgi, plasma membrane, vacuole | 33.67 | 38.84 |
| VIT_14s0128g00120.t01 | Wine grape | plasma membrane, plastid, vacuole | 40.45 | 38.33 |
| Zm00001d005936_P001 | Maize | plasma membrane | 37.69 | 38.17 |
| GSMUA_Achr7P12810_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 28.89 | 37.7 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 33.17 | 37.39 |
| TraesCS5D01G254900.1 | Wheat | golgi, plasma membrane | 36.68 | 37.24 |
| HORVU5Hr1G069980.1 | Barley | plasma membrane | 35.93 | 37.24 |
| PGSC0003DMT400046825 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 37.19 | 37.19 |
| Solyc03g112340.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 37.19 | 37.19 |
| GSMUA_Achr6P30500_001 | Banana | plasma membrane | 27.14 | 36.99 |
| Os09t0468300-00 | Rice | golgi, plasma membrane | 35.93 | 36.95 |
| TraesCS5A01G248100.1 | Wheat | plasma membrane | 36.43 | 36.52 |
| TraesCS5B01G245800.1 | Wheat | plasma membrane | 36.18 | 36.36 |
| AT4G40070.1 | Thale cress | extracellular, golgi, mitochondrion, plastid | 29.4 | 36.22 |
| GSMUA_Achr9P15010_001 | Banana | endoplasmic reticulum, plasma membrane | 32.41 | 36.03 |
| GSMUA_Achr3P20400_001 | Banana | mitochondrion | 30.9 | 35.76 |
| Zm00001d020789_P001 | Maize | plasma membrane | 35.68 | 35.68 |
| EER99041 | Sorghum | endoplasmic reticulum, plasma membrane | 36.18 | 34.95 |
| GSMUA_Achr3P06680_001 | Banana | mitochondrion, plastid | 33.92 | 34.79 |
| PGSC0003DMT400073575 | Potato | extracellular, plasma membrane | 37.44 | 34.41 |
| TraesCS6D01G113000.1 | Wheat | golgi | 34.42 | 34.16 |
| GSMUA_Achr10P... | Banana | plasma membrane | 33.17 | 34.02 |
| TraesCS6B01G151000.1 | Wheat | extracellular, golgi, plasma membrane | 34.42 | 33.91 |
| TraesCS6A01G122800.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 34.42 | 33.74 |
| AT4G09120.1 | Thale cress | plasma membrane | 28.89 | 33.33 |
| AT2G34990.2 | Thale cress | plasma membrane | 26.88 | 33.02 |
| HORVU6Hr1G022590.1 | Barley | golgi, mitochondrion | 33.42 | 32.92 |
| AT2G35000.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 30.9 | 32.54 |
| TraesCS3B01G549900.1 | Wheat | vacuole | 25.63 | 32.38 |
| TraesCS3D01G495500.1 | Wheat | vacuole | 31.16 | 32.12 |
| Os08t0484200-01 | Rice | golgi | 33.17 | 31.96 |
| GSMUA_AchrUn_... | Banana | plastid | 28.89 | 31.94 |
| AT1G35330.1 | Thale cress | endoplasmic reticulum | 25.88 | 31.4 |
| EES18560 | Sorghum | golgi, plasma membrane | 30.65 | 31.04 |
| HORVU4Hr1G022090.1 | Barley | endoplasmic reticulum, golgi, plasma membrane | 16.33 | 30.66 |
| AT4G09110.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 23.12 | 30.46 |
| Zm00001d031261_P001 | Maize | golgi | 28.39 | 29.97 |
| AT1G72200.1 | Thale cress | plasma membrane | 30.15 | 29.7 |
| HORVU4Hr1G078260.1 | Barley | plasma membrane | 26.63 | 29.69 |
| AT4G09130.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 26.63 | 29.69 |
| AT4G17920.1 | Thale cress | plasma membrane | 21.36 | 29.41 |
| AT1G22500.1 | Thale cress | plasma membrane | 27.89 | 29.13 |
| Os03t0188200-01 | Rice | golgi | 25.63 | 28.9 |
| TraesCS4B01G304400.1 | Wheat | plasma membrane | 25.63 | 28.73 |
| TraesCS4D01G302600.1 | Wheat | plasma membrane | 25.63 | 28.73 |
| TraesCS4A01G404600.1 | Wheat | plasma membrane | 25.63 | 28.73 |
| AT5G46650.1 | Thale cress | plasma membrane | 20.85 | 28.72 |
| HORVU4Hr1G080840.1 | Barley | cytosol | 16.83 | 28.27 |
| Zm00001d037192_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 29.9 | 28.27 |
| Zm00001d018122_P001 | Maize | vacuole | 28.14 | 26.73 |
| EER92732 | Sorghum | golgi | 24.62 | 26.63 |
| TraesCS6B01G346000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 26.88 | 26.62 |
| TraesCS4A01G104900.1 | Wheat | mitochondrion | 25.63 | 26.36 |
| Zm00001d052189_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 27.39 | 26.27 |
| Os06t0218300-01 | Rice | endoplasmic reticulum, extracellular, golgi | 29.15 | 26.24 |
| TraesCS6D01G294800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 26.63 | 26.17 |
| Zm00001d029395_P001 | Maize | plasma membrane, plastid | 25.13 | 26.11 |
| OQU85775 | Sorghum | golgi, plasma membrane, vacuole | 27.39 | 25.77 |
| TraesCS6A01G315600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 26.13 | 25.68 |
| TraesCS7B01G081700.1 | Wheat | golgi | 26.63 | 25.6 |
| Zm00001d048230_P001 | Maize | golgi | 24.37 | 25.53 |
| TraesCS7D01G178000.1 | Wheat | golgi | 26.13 | 25.49 |
| HORVU4Hr1G057610.1 | Barley | plastid | 26.38 | 25.49 |
| HORVU6Hr1G077610.1 | Barley | plasma membrane | 25.88 | 25.37 |
| TraesCS4D01G200100.1 | Wheat | plastid | 26.38 | 25.36 |
| AT2G27940.1 | Thale cress | plasma membrane | 15.08 | 25.32 |
| TraesCS7A01G176700.1 | Wheat | golgi | 26.38 | 25.3 |
| Os02t0759400-01 | Rice | endoplasmic reticulum, golgi, mitochondrion, plastid | 27.64 | 25.17 |
| Zm00001d027983_P001 | Maize | plasma membrane, plastid | 22.86 | 25.14 |
| KXG39223 | Sorghum | golgi, plasma membrane, plastid, vacuole | 24.37 | 25.06 |
| Os03t0391100-00 | Rice | endoplasmic reticulum, golgi | 25.63 | 23.45 |
| TraesCS4B01G199100.1 | Wheat | plastid | 26.13 | 23.27 |
| AT2G35420.1 | Thale cress | plasma membrane, plastid | 14.32 | 22.44 |
| OQU76061 | Sorghum | cytosol, peroxisome, plasma membrane | 29.9 | 21.83 |
| HORVU7Hr1G036380.2 | Barley | endoplasmic reticulum | 22.36 | 21.39 |
| AT2G20030.1 | Thale cress | endoplasmic reticulum, plasma membrane | 18.59 | 18.97 |
| AT5G05810.1 | Thale cress | endoplasmic reticulum, golgi | 18.59 | 18.18 |
| AT4G28890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 18.59 | 17.13 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | EntrezGene:819684 | UniProt:A0A178V9T3 | ProteinID:AAF27026.1 | ProteinID:AEE74204.1 |
| EMBL:AF132016 | ArrayExpress:AT3G05200 | EnsemblPlantsGene:AT3G05200 | RefSeq:AT3G05200 | TAIR:AT3G05200 | RefSeq:AT3G05200-TAIR-G |
| EnsemblPlants:AT3G05200.1 | TAIR:AT3G05200.1 | Symbol:ATL6 | EMBL:AY080617 | Unigene:At.22987 | EMBL:DQ086860 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009719 | GO:GO:0009814 | GO:GO:0009816 |
| GO:GO:0009987 | GO:GO:0010200 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0043161 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 |
| RefSeq:NP_566249.1 | ProteinID:OAP02471.1 | PFAM:PF13639 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF414 | UniProt:Q8RXX9 |
| SMART:SM00184 | SUPFAM:SSF57850 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0000163351 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
Coordinates
chr3:+:1476960..1478850
Molecular Weight (calculated)
43276.6 Da
IEP (calculated)
8.946
GRAVY (calculated)
-0.202
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.