Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 4
- extracellular 3
- vacuole 4
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011068.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 83.8 | 86.81 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 83.56 | 86.57 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 83.33 | 86.33 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 80.09 | 82.38 |
| Bra024178.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 80.09 | 82.38 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 77.78 | 80.96 |
| Bra010349.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 77.55 | 79.76 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 75.23 | 79.66 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 75.23 | 79.46 |
| AT2G20030.1 | Thale cress | endoplasmic reticulum, plasma membrane | 60.65 | 67.18 |
| PGSC0003DMT400070587 | Potato | plastid | 41.9 | 52.62 |
| Solyc05g018310.1.1 | Tomato | extracellular, plasma membrane, vacuole | 38.66 | 51.54 |
| KRH39345 | Soybean | endoplasmic reticulum, vacuole | 47.45 | 48.93 |
| KRH76331 | Soybean | endoplasmic reticulum | 47.69 | 48.36 |
| PGSC0003DMT400000810 | Potato | plasma membrane | 39.81 | 46.49 |
| Solyc12g007320.1.1 | Tomato | plasma membrane | 40.51 | 45.93 |
| VIT_11s0016g03420.t01 | Wine grape | plastid | 48.38 | 44.56 |
| GSMUA_Achr6P26720_001 | Banana | plasma membrane | 32.18 | 39.6 |
| GSMUA_Achr9P06250_001 | Banana | endoplasmic reticulum, plasma membrane | 33.56 | 39.51 |
| GSMUA_Achr9P00230_001 | Banana | vacuole | 33.33 | 39.13 |
| GSMUA_Achr4P08120_001 | Banana | plasma membrane | 31.02 | 37.33 |
| GSMUA_Achr6P22700_001 | Banana | plasma membrane | 18.98 | 34.45 |
| HORVU1Hr1G095220.1 | Barley | golgi, plasma membrane | 31.02 | 34.01 |
| TraesCS1A01G444900.1 | Wheat | golgi, plasma membrane | 29.4 | 32.32 |
| Zm00001d039216_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 29.17 | 32.23 |
| Os05t0596500-01 | Rice | endoplasmic reticulum, plasma membrane | 27.78 | 31.17 |
| AT4G09100.1 | Thale cress | extracellular | 9.49 | 31.06 |
| TraesCS1D01G453000.1 | Wheat | extracellular, plasma membrane | 30.56 | 30.41 |
| TraesCS1B01G479700.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 30.32 | 30.32 |
| Zm00001d009777_P001 | Maize | extracellular, golgi, plasma membrane | 27.31 | 28.99 |
| EES18815 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 30.56 | 27.91 |
| AT5G05810.1 | Thale cress | endoplasmic reticulum, golgi | 25.69 | 27.27 |
| AT4G40070.1 | Thale cress | extracellular, golgi, mitochondrion, plastid | 15.97 | 21.36 |
| AT5G46650.1 | Thale cress | plasma membrane | 13.43 | 20.07 |
| AT5G27420.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 16.67 | 19.57 |
| AT4G17920.1 | Thale cress | plasma membrane | 12.96 | 19.38 |
| AT2G34990.2 | Thale cress | plasma membrane | 14.35 | 19.14 |
| AT4G09120.1 | Thale cress | plasma membrane | 15.05 | 18.84 |
| AT1G35330.1 | Thale cress | endoplasmic reticulum | 14.12 | 18.6 |
| AT3G05200.1 | Thale cress | plasma membrane | 17.13 | 18.59 |
| AT2G35420.1 | Thale cress | plasma membrane, plastid | 10.65 | 18.11 |
| AT4G09110.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 12.5 | 17.88 |
| AT1G22500.1 | Thale cress | plasma membrane | 15.51 | 17.59 |
| AT1G72200.1 | Thale cress | plasma membrane | 16.2 | 17.33 |
| AT2G27940.1 | Thale cress | plasma membrane | 9.49 | 17.3 |
| AT2G35000.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 15.05 | 17.2 |
| AT4G09130.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 13.66 | 16.53 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | EntrezGene:829010 | ProteinID:AEE85559.1 | ArrayExpress:AT4G28890 | EnsemblPlantsGene:AT4G28890 |
| RefSeq:AT4G28890 | TAIR:AT4G28890 | RefSeq:AT4G28890-TAIR-G | EnsemblPlants:AT4G28890.1 | TAIR:AT4G28890.1 | EMBL:BT015731 |
| EMBL:BT020178 | EMBL:BX828195 | ProteinID:CAB43903.1 | ProteinID:CAB81477.1 | EMBL:DQ059125 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR001841 |
| InterPro:IPR013083 | RefSeq:NP_194618.3 | PFAM:PF13639 | PO:PO:0003015 | PO:PO:0005059 | PO:PO:0009005 |
| PO:PO:0020100 | PO:PO:0020124 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF431 | UniProt:Q5XF85 |
| SMART:SM00184 | SUPFAM:SSF57850 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI000009F604 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
ATL42E3 ubiquitin-protein ligase ATL42 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF85]
Coordinates
chr4:-:14256243..14257965
Molecular Weight (calculated)
49376.7 Da
IEP (calculated)
7.800
GRAVY (calculated)
-0.463
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MYQIFFFFLP LLHSYASAQT PPPFRNGDLV ANFEPSLAVV TGVLAIMFAL TFVLLVYAKC CHIDLRSGSG DRRRHDRRLR QGIFFNRSTA SSDRFSGLDK
101: TAIESLPLFR FSALKGSKQG LDCSVCLSKF ESVEILRLLP KCRHAFHIGC IDQWLEQHAT CPLCRDRVSM EEDSSVLTNG NSFRFLNQSE IREDSSLELY
201: IEREEEEERI HREELSGSSR FSIGESFRKI LKLGNKEKTL LDEHVNDKDE KKLMHKFNHR IVVSDVVFKN RWSNVSSSDL MFLNSEMVNS ISSERFSSLD
301: HVKRGDEEDQ IGILRIKEEM EAKRMLENKL TSMTTMFSSE NGDSGSKSRS VMIEPGRRSV SDITAVPRLS ISIHGDCSGS AAETASALQN GGNETEERRR
401: RLWLPIARKT AQWFANREKR SQINTTHQHF DV
101: TAIESLPLFR FSALKGSKQG LDCSVCLSKF ESVEILRLLP KCRHAFHIGC IDQWLEQHAT CPLCRDRVSM EEDSSVLTNG NSFRFLNQSE IREDSSLELY
201: IEREEEEERI HREELSGSSR FSIGESFRKI LKLGNKEKTL LDEHVNDKDE KKLMHKFNHR IVVSDVVFKN RWSNVSSSDL MFLNSEMVNS ISSERFSSLD
301: HVKRGDEEDQ IGILRIKEEM EAKRMLENKL TSMTTMFSSE NGDSGSKSRS VMIEPGRRSV SDITAVPRLS ISIHGDCSGS AAETASALQN GGNETEERRR
401: RLWLPIARKT AQWFANREKR SQINTTHQHF DV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.