Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 4
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12022 | Canola | plasma membrane | 73.48 | 68.27 |
| CDY03116 | Canola | plasma membrane | 73.48 | 68.27 |
| Bra028075.1-P | Field mustard | plasma membrane | 73.17 | 67.99 |
| AT4G09120.1 | Thale cress | plasma membrane | 50.61 | 48.12 |
| AT4G09130.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 50.0 | 45.94 |
| AT4G09110.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 38.41 | 41.72 |
| AT4G09100.1 | Thale cress | extracellular | 15.24 | 37.88 |
| AT2G35000.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 43.29 | 37.57 |
| AT2G34990.2 | Thale cress | plasma membrane | 36.89 | 37.35 |
| GSMUA_Achr5P17910_001 | Banana | golgi, plasma membrane, vacuole | 30.79 | 29.28 |
| GSMUA_Achr6P30500_001 | Banana | plasma membrane | 25.3 | 28.42 |
| GSMUA_Achr7P12810_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 25.91 | 27.87 |
| AT4G40070.1 | Thale cress | extracellular, golgi, mitochondrion, plastid | 27.13 | 27.55 |
| HORVU4Hr1G080840.1 | Barley | cytosol | 19.82 | 27.43 |
| GSMUA_Achr3P20400_001 | Banana | mitochondrion | 28.05 | 26.74 |
| GSMUA_Achr9P15010_001 | Banana | endoplasmic reticulum, plasma membrane | 28.96 | 26.54 |
| AT5G27420.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 29.27 | 26.09 |
| AT3G05200.1 | Thale cress | plasma membrane | 31.4 | 25.88 |
| HORVU4Hr1G022090.1 | Barley | endoplasmic reticulum, golgi, plasma membrane | 16.46 | 25.47 |
| Zm00001d005936_P001 | Maize | plasma membrane | 30.49 | 25.45 |
| Os09t0468300-00 | Rice | golgi, plasma membrane | 29.88 | 25.32 |
| HORVU5Hr1G069980.1 | Barley | plasma membrane | 29.57 | 25.26 |
| TraesCS5D01G254900.1 | Wheat | golgi, plasma membrane | 30.18 | 25.26 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 27.13 | 25.21 |
| AT1G22500.1 | Thale cress | plasma membrane | 29.27 | 25.2 |
| AT4G17920.1 | Thale cress | plasma membrane | 21.95 | 24.91 |
| TraesCS3D01G495500.1 | Wheat | vacuole | 29.27 | 24.87 |
| AT1G72200.1 | Thale cress | plasma membrane | 30.49 | 24.75 |
| TraesCS5B01G245800.1 | Wheat | plasma membrane | 29.88 | 24.75 |
| GSMUA_Achr10P... | Banana | plasma membrane | 29.27 | 24.74 |
| Zm00001d020789_P001 | Maize | plasma membrane | 29.88 | 24.62 |
| GSMUA_Achr3P06680_001 | Banana | mitochondrion, plastid | 28.96 | 24.48 |
| TraesCS5A01G248100.1 | Wheat | plasma membrane | 29.57 | 24.43 |
| EER99041 | Sorghum | endoplasmic reticulum, plasma membrane | 30.49 | 24.27 |
| AT5G46650.1 | Thale cress | plasma membrane | 20.73 | 23.53 |
| TraesCS6B01G151000.1 | Wheat | extracellular, golgi, plasma membrane | 28.96 | 23.51 |
| TraesCS3B01G549900.1 | Wheat | vacuole | 22.56 | 23.49 |
| TraesCS6D01G113000.1 | Wheat | golgi | 28.66 | 23.44 |
| Zm00001d052189_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 29.57 | 23.37 |
| GSMUA_AchrUn_... | Banana | plastid | 25.61 | 23.33 |
| TraesCS6A01G122800.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 28.66 | 23.15 |
| HORVU6Hr1G022590.1 | Barley | golgi, mitochondrion | 28.35 | 23.02 |
| OQU85775 | Sorghum | golgi, plasma membrane, vacuole | 29.57 | 22.93 |
| Zm00001d018122_P001 | Maize | vacuole | 28.96 | 22.67 |
| EES18560 | Sorghum | golgi, plasma membrane | 27.13 | 22.65 |
| Zm00001d031261_P001 | Maize | golgi | 25.91 | 22.55 |
| Zm00001d037192_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 28.66 | 22.33 |
| Os08t0484200-01 | Rice | golgi | 28.05 | 22.28 |
| TraesCS7D01G178000.1 | Wheat | golgi | 27.44 | 22.06 |
| TraesCS7B01G081700.1 | Wheat | golgi | 27.74 | 21.98 |
| TraesCS6B01G346000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 26.83 | 21.89 |
| TraesCS7A01G176700.1 | Wheat | golgi | 27.44 | 21.69 |
| TraesCS6D01G294800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 26.22 | 21.23 |
| TraesCS6A01G315600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 26.22 | 21.23 |
| HORVU6Hr1G077610.1 | Barley | plasma membrane | 26.22 | 21.18 |
| AT2G27940.1 | Thale cress | plasma membrane | 15.24 | 21.1 |
| TraesCS4A01G104900.1 | Wheat | mitochondrion | 24.09 | 20.41 |
| Os02t0759400-01 | Rice | endoplasmic reticulum, golgi, mitochondrion, plastid | 27.13 | 20.37 |
| TraesCS4D01G200100.1 | Wheat | plastid | 25.3 | 20.05 |
| Os06t0218300-01 | Rice | endoplasmic reticulum, extracellular, golgi | 26.83 | 19.91 |
| HORVU4Hr1G057610.1 | Barley | plastid | 25.0 | 19.9 |
| HORVU4Hr1G078260.1 | Barley | plasma membrane | 21.34 | 19.61 |
| TraesCS4A01G404600.1 | Wheat | plasma membrane | 21.04 | 19.44 |
| Os03t0188200-01 | Rice | golgi | 20.43 | 18.98 |
| AT2G35420.1 | Thale cress | plasma membrane, plastid | 14.63 | 18.9 |
| Zm00001d027983_P001 | Maize | plasma membrane, plastid | 20.73 | 18.78 |
| TraesCS4B01G304400.1 | Wheat | plasma membrane | 20.12 | 18.59 |
| TraesCS4D01G302600.1 | Wheat | plasma membrane | 20.12 | 18.59 |
| EER92732 | Sorghum | golgi | 20.73 | 18.48 |
| Zm00001d048230_P001 | Maize | golgi | 21.34 | 18.42 |
| Os03t0391100-00 | Rice | endoplasmic reticulum, golgi | 24.39 | 18.39 |
| Zm00001d029395_P001 | Maize | plasma membrane, plastid | 21.34 | 18.28 |
| TraesCS4B01G199100.1 | Wheat | plastid | 24.7 | 18.12 |
| OQU76061 | Sorghum | cytosol, peroxisome, plasma membrane | 29.88 | 17.98 |
| KXG39223 | Sorghum | golgi, plasma membrane, plastid, vacuole | 20.12 | 17.05 |
| HORVU7Hr1G036380.2 | Barley | endoplasmic reticulum | 21.34 | 16.83 |
| AT2G20030.1 | Thale cress | endoplasmic reticulum, plasma membrane | 18.9 | 15.9 |
| AT5G05810.1 | Thale cress | endoplasmic reticulum, golgi | 19.51 | 15.72 |
| AT4G28890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 18.6 | 14.12 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | EntrezGene:840422 | UniProt:A0A2H1ZED7 | ProteinID:AEE31779.2 | ArrayExpress:AT1G35330 |
| EnsemblPlantsGene:AT1G35330 | RefSeq:AT1G35330 | TAIR:AT1G35330 | RefSeq:AT1G35330-TAIR-G | EnsemblPlants:AT1G35330.1 | TAIR:AT1G35330.1 |
| Unigene:At.51949 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 | GO:GO:0046872 |
| GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR011016 | InterPro:IPR013083 | RefSeq:NP_174766.2 | PFAM:PF13639 |
| PO:PO:0000256 | PO:PO:0000262 | PO:PO:0009005 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF414 |
| SMART:SM00184 | SMART:SM00744 | SUPFAM:SSF57850 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI00084917C0 |
| InterPro:Znf_RING | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
RING/U-box superfamily protein [Source:TAIR;Acc:AT1G35330]
Coordinates
chr1:+:12964986..12966113
Molecular Weight (calculated)
36635.0 Da
IEP (calculated)
8.807
GRAVY (calculated)
-0.383
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MMTIGKSPIL LHHHVIFLLL LVLQVSGQHQ PRTTAPPYIA QRPNQVPAVI IAMLMFTLLF SMLACCVCYK YTNTSPHGTS SDTEEGGHGE VAFTRRTSRG
101: LGKDVINSFP SFLYSQVKGL KIGKGGVECA ICLNEFEDEE TLRLMPPCSH AFHASCIDVW LSSRSTCPVC RASLPPKPGS DQNSLYPFIR PHDNQDMDLE
201: NVTARRSVLE SPDVRLLDRL SWSNNTGANT PPRSRSTGLS NWRITELLFP RSHSTGHSLV PRVENLDRFT LQLPEEVRRQ LSHMKTLPQA RSSREGYRSG
301: SVGSERRGKG KEKEFGEGSF DRLKAEMV
101: LGKDVINSFP SFLYSQVKGL KIGKGGVECA ICLNEFEDEE TLRLMPPCSH AFHASCIDVW LSSRSTCPVC RASLPPKPGS DQNSLYPFIR PHDNQDMDLE
201: NVTARRSVLE SPDVRLLDRL SWSNNTGANT PPRSRSTGLS NWRITELLFP RSHSTGHSLV PRVENLDRFT LQLPEEVRRQ LSHMKTLPQA RSSREGYRSG
301: SVGSERRGKG KEKEFGEGSF DRLKAEMV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.