Factsheet for GSMUA_Achr3P20400_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
golgi 3
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	golgi, plasma membrane	71.51	69.69
GSMUA_Achr5P17910_001	Banana	golgi, plasma membrane, vacuole	51.74	51.59
GSMUA_Achr7P12810_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	44.77	50.49
GSMUA_Achr8P09280_001	Banana	cytosol	6.98	50.0
GSMUA_Achr10P...	Banana	plasma membrane	52.62	46.65
GSMUA_Achr6P30500_001	Banana	plasma membrane	39.53	46.58
GSMUA_Achr3P06680_001	Banana	mitochondrion, plastid	45.64	40.46
GSMUA_Achr9P15010_001	Banana	endoplasmic reticulum, plasma membrane	40.41	38.83
AT4G09100.1	Thale cress	extracellular	14.53	37.88
GSMUA_AchrUn_...	Banana	plastid	39.53	37.78
KRG92822	Soybean	endoplasmic reticulum, plasma membrane, vacuole	34.59	35.42
CDY53236	Canola	plasma membrane	35.17	34.87
KRH33975	Soybean	golgi, plasma membrane, vacuole	35.76	34.26
CDX75097	Canola	extracellular	13.66	34.06
KRH68588	Soybean	plasma membrane	35.76	33.61
Bra038386.1-P	Field mustard	extracellular	13.37	33.33
CDY48058	Canola	extracellular	13.37	33.33
CDY39477	Canola	extracellular	29.94	33.23
Bra010641.1-P	Field mustard	extracellular, golgi	29.65	33.12
CDX90377	Canola	extracellular, golgi	29.65	33.12
AT5G27420.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	35.17	32.88
KRG96857	Soybean	vacuole	35.76	32.8
Bra036631.1-P	Field mustard	plasma membrane	33.14	32.57
CDY19719	Canola	endoplasmic reticulum, plasma membrane, vacuole	33.14	32.57
CDX99986	Canola	plasma membrane	32.85	32.38
Solyc03g112340.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	36.92	31.91
VIT_18s0001g06670.t01	Wine grape	extracellular, plasma membrane, vacuole	36.92	31.91
Bra040642.1-P	Field mustard	plasma membrane	35.76	31.87
KRH52998	Soybean	endoplasmic reticulum, extracellular, plasma membrane	30.81	31.74
CDY18787	Canola	plasma membrane	35.17	31.27
PGSC0003DMT400046825	Potato	endoplasmic reticulum, plasma membrane, vacuole	36.05	31.16
CDY25038	Canola	plasma membrane	33.43	31.08
VIT_14s0128g00120.t01	Wine grape	plasma membrane, plastid, vacuole	37.79	30.95
AT3G05200.1	Thale cress	plasma membrane	35.76	30.9
CDY05577	Canola	plasma membrane	34.3	30.89
KRH62285	Soybean	endoplasmic reticulum, plasma membrane, vacuole	30.52	30.88
CDX82175	Canola	extracellular	20.93	30.77
Bra020591.1-P	Field mustard	plasma membrane	34.01	30.71
TraesCS4D01G302600.1	Wheat	plasma membrane	31.69	30.7
CDX86163	Canola	plasma membrane	26.74	30.67
TraesCS4A01G404600.1	Wheat	plasma membrane	31.4	30.42
Bra009962.1-P	Field mustard	mitochondrion, plastid	25.29	30.42
Os03t0188200-01	Rice	golgi	31.1	30.31
Bra039454.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	34.01	30.31
Bra009960.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	26.74	30.26
CDX86162	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.74	30.26
HORVU4Hr1G078260.1	Barley	plasma membrane	31.4	30.25
TraesCS4B01G304400.1	Wheat	plasma membrane	31.1	30.14
KRH72413	Soybean	cytosol, golgi, vacuole	31.98	29.41
CDX80653	Canola	plasma membrane	25.87	29.37
PGSC0003DMT400073575	Potato	extracellular, plasma membrane	36.92	29.33
AT4G40070.1	Thale cress	extracellular, golgi, mitochondrion, plastid	27.33	29.1
AT2G35000.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	31.98	29.1
CDX84269	Canola	endoplasmic reticulum, plasma membrane, plastid	31.1	29.08
CDY31657	Canola	extracellular, plasma membrane, plastid	31.1	29.08
EER92732	Sorghum	golgi	30.81	28.8
AT4G09120.1	Thale cress	plasma membrane	28.78	28.7
AT2G34990.2	Thale cress	plasma membrane	26.74	28.4
GSMUA_Achr4P12270_001	Banana	plastid	14.24	28.32
KRH16796	Soybean	cytosol, endoplasmic reticulum, plasma membrane, plastid	31.1	28.23
Zm00001d048230_P001	Maize	golgi	31.1	28.16
AT1G35330.1	Thale cress	endoplasmic reticulum	26.74	28.05
Bra005374.1-P	Field mustard	plasma membrane, plastid, vacuole	29.94	27.99
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane	13.66	27.98
Bra003887.1-P	Field mustard	endoplasmic reticulum, plasma membrane	28.78	27.58
PGSC0003DMT400005472	Potato	endoplasmic reticulum, plasma membrane, vacuole	30.52	26.85
Zm00001d027983_P001	Maize	plasma membrane, plastid	28.2	26.8
Bra012330.1-P	Field mustard	golgi, plasma membrane	26.74	26.74
CDY70284	Canola	plasma membrane	30.23	26.74
Bra040855.1-P	Field mustard	golgi, plasma membrane	29.07	26.6
CDY21367	Canola	golgi, plasma membrane	29.07	26.6
CDY62007	Canola	golgi, plasma membrane	29.07	26.6
Bra000673.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	26.16	26.55
CDX90713	Canola	extracellular, golgi, plasma membrane	26.16	26.55
AT4G09110.1	Thale cress	endoplasmic reticulum, extracellular, golgi	23.26	26.49
AT1G72200.1	Thale cress	plasma membrane	31.1	26.49
Solyc04g074820.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	30.23	26.46
CDX82176	Canola	extracellular	27.91	26.3
Solyc12g087860.1.1	Tomato	vacuole	28.49	26.27
AT1G22500.1	Thale cress	plasma membrane	29.07	26.25
CDY12022	Canola	plasma membrane	26.74	26.06
Bra008016.1-P	Field mustard	plasma membrane	30.52	26.05
CDY03651	Canola	plasma membrane	30.52	26.05
AT4G09130.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	27.03	26.05
CDY05049	Canola	plasma membrane	22.09	26.03
KRH72412	Soybean	nucleus, plasma membrane, plastid	29.07	25.91
CDY03116	Canola	plasma membrane	26.45	25.78
PGSC0003DMT400045807	Potato	plasma membrane	28.2	25.66
Bra005375.1-P	Field mustard	cytosol, nucleus, plastid	23.26	25.56
CDY31656	Canola	cytosol, endoplasmic reticulum, plastid	23.26	25.56
KRH16794	Soybean	plasma membrane	29.07	25.51
Bra028075.1-P	Field mustard	plasma membrane	26.16	25.5
CDX82179	Canola	plasma membrane	25.87	25.36
CDX84270	Canola	cytosol, plastid, vacuole	22.97	25.24
Bra008015.1-P	Field mustard	plasma membrane	28.78	25.0
CDY03652	Canola	plasma membrane	28.78	25.0
GSMUA_Achr1P17360_001	Banana	nucleus, plasma membrane, plastid	18.31	25.0
Bra001139.1-P	Field mustard	extracellular, golgi, plasma membrane	24.42	24.14
CDY27787	Canola	extracellular, plasma membrane, vacuole	19.77	22.59
CDY05145	Canola	plasma membrane	19.19	22.22
CDY70750	Canola	extracellular, mitochondrion, nucleus	19.19	21.78
GSMUA_Achr6P22700_001	Banana	plasma membrane	14.83	21.43
GSMUA_Achr9P13810_001	Banana	golgi, mitochondrion, plastid, vacuole	22.67	21.2
GSMUA_Achr3P05190_001	Banana	endoplasmic reticulum, golgi, plastid	21.8	19.53
GSMUA_Achr9P06250_001	Banana	endoplasmic reticulum, plasma membrane	20.64	19.35
GSMUA_Achr4P08120_001	Banana	plasma membrane	19.48	18.66
GSMUA_Achr6P26720_001	Banana	plasma membrane	18.6	18.23
GSMUA_Achr9P00230_001	Banana	vacuole	19.48	18.21
CDY12527	Canola	extracellular, plasma membrane, vacuole	12.5	18.07
CDY25739	Canola	endoplasmic reticulum, extracellular, plasma membrane	12.5	18.07
CDY50446	Canola	mitochondrion	12.21	17.57

Protein Annotations

EnsemblPlants:GSMUA_Achr3P20400_001	EnsemblPlants:GSMUA_Achr3T20400_001	EnsemblPlantsGene:GSMUA_Achr3G20400_001	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155
PANTHER:PTHR14155:SF263	PFAM:PF13639	PFscan:PS50089	SEG:seg	SignalP:SignalP-noTM	SMART:SM00184
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000295165B	UniProt:M0SGA6	MapMan:19.2.2.1.5.3.3	:

Description

Putative E3 ubiquitin-protein ligase ATL6 [Source:GMGC_GENE;Acc:GSMUA_Achr3G20400_001]

Coordinates

chr3:-:21548704..21549882

Molecular Weight (calculated)

37508.5 Da

IEP (calculated)

8.502

GRAVY (calculated)

-0.331

Length

344 amino acids

Sequence
(BLAST)

001: MATTLRRRSI AALSNGRGVM AVLFLLALLP LTPRCAAQSS APSSHDSGPT NPTTLSPSTA TIIAVLISAF FFLAFFFVYI RQCANDDDPS NQHVGYEAVA
101: RSGRRRGAVG MSPEVLEMFP MMSYSDAKAL KVGRGTLECA VCLSEFEDDE TLRLLPGCCH VFHPECIGAW LASHVTCPVC RSDLSTSPTE EETIELTRIG
201: SERREARSRR GRRSTKLPRS HSTGHSLAQP QEGEDVDRYT LRLPEHIRRE IFAARKFHRS TSCVAFPVAG EGSSRVSDRW PSFLIRTLSF TIPAWKRGDN
301: EGSVKKGEAE GSSRGRFGGV RTPFDCLGGG GRGDAPGDER GPTQ

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.