Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P13810_001 | Banana | golgi, mitochondrion, plastid, vacuole | 70.05 | 73.1 |
| GSMUA_Achr8P09280_001 | Banana | cytosol | 5.73 | 45.83 |
| TraesCSU01G093700.1 | Wheat | plastid | 46.88 | 45.23 |
| EER90301 | Sorghum | endoplasmic reticulum, golgi, vacuole | 47.14 | 45.02 |
| TraesCS7D01G420000.1 | Wheat | plastid | 46.88 | 44.89 |
| TraesCS7B01G327800.1 | Wheat | plastid | 46.88 | 44.78 |
| HORVU7Hr1G098470.1 | Barley | plastid | 46.61 | 44.75 |
| Zm00001d014612_P001 | Maize | peroxisome | 46.09 | 44.58 |
| Os06t0695900-01 | Rice | endoplasmic reticulum, vacuole | 45.83 | 44.11 |
| KRH62179 | Soybean | plasma membrane | 34.9 | 39.88 |
| KRH70712 | Soybean | endoplasmic reticulum, extracellular, vacuole | 21.88 | 39.44 |
| CDX98867 | Canola | endoplasmic reticulum, golgi | 35.94 | 39.09 |
| CDX70126 | Canola | plasma membrane | 38.54 | 36.72 |
| AT5G05810.1 | Thale cress | endoplasmic reticulum, golgi | 38.28 | 36.12 |
| Bra009136.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 37.76 | 35.89 |
| Solyc07g007440.1.1 | Tomato | plasma membrane, vacuole | 37.5 | 34.29 |
| VIT_11s0052g00530.t01 | Wine grape | plasma membrane | 40.62 | 34.14 |
| PGSC0003DMT400078951 | Potato | plasma membrane | 36.72 | 33.41 |
| GSMUA_Achr6P26720_001 | Banana | plasma membrane | 28.39 | 31.05 |
| GSMUA_Achr9P00230_001 | Banana | vacuole | 29.17 | 30.43 |
| GSMUA_Achr9P06250_001 | Banana | endoplasmic reticulum, plasma membrane | 27.34 | 28.61 |
| GSMUA_Achr6P22700_001 | Banana | plasma membrane | 17.71 | 28.57 |
| GSMUA_Achr4P08120_001 | Banana | plasma membrane | 26.3 | 28.13 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 10.94 | 25.0 |
| GSMUA_Achr4P12270_001 | Banana | plastid | 10.42 | 23.12 |
| GSMUA_Achr7P12810_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 17.97 | 22.62 |
| GSMUA_AchrUn_... | Banana | plastid | 21.09 | 22.5 |
| GSMUA_Achr6P30500_001 | Banana | plasma membrane | 16.67 | 21.92 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 20.05 | 21.81 |
| GSMUA_Achr3P20400_001 | Banana | mitochondrion | 19.53 | 21.8 |
| GSMUA_Achr1P17360_001 | Banana | nucleus, plasma membrane, plastid | 13.8 | 21.03 |
| GSMUA_Achr5P17910_001 | Banana | golgi, plasma membrane, vacuole | 18.23 | 20.29 |
| GSMUA_Achr10P... | Banana | plasma membrane | 20.31 | 20.1 |
| GSMUA_Achr3P06680_001 | Banana | mitochondrion, plastid | 19.01 | 18.81 |
| GSMUA_Achr9P15010_001 | Banana | endoplasmic reticulum, plasma membrane | 17.45 | 18.72 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P05190_001 | EnsemblPlants:GSMUA_Achr3T05190_001 | EnsemblPlantsGene:GSMUA_Achr3G05190_001 | Gene3D:3.30.40.10 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 |
| PANTHER:PTHR14155:SF78 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| TMHMM:TMhelix | UniParc:UPI000296A04E | UniProt:M0SBY7 | MapMan:19.2.2.1.5.3.3 | : | : |
Description
Putative RING-H2 finger protein ATL43 [Source:GMGC_GENE;Acc:GSMUA_Achr3G05190_001]
Coordinates
chr3:-:3372357..3373622
Molecular Weight (calculated)
41297.9 Da
IEP (calculated)
8.433
GRAVY (calculated)
-0.306
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLHHRQLDL VTHLVPRHLL TAAADDLDVG AAPSPSPSFH PSSFVAPFRP GIAVIVGVLT IIFSLTFLLL LYARHCKRSA ASYGAGGSAN GGFPPSASER
101: RHSGVDRAVV ESLPVFRFGS LQGQKEGLEC AVCLSRFEPT EALRLLPKCR HGFHVECVDT WLDAHSTCPL CRVRVDPEDV LLVPRSVPES HGGGGGEKAD
201: TKGGGDGATT VAPNPFGRRI SGRHSSAGER SSEPLQIVDK LLPTEATEDR EAFERRHSHR IVVSDVDVRL DRWSDLRPTD LLFLRREMII TESGRFSASK
301: AVRALSSSTA PGDADAAASR CASEIAGVHR MPSGRANPTG AGGARRAAEE ERTLRRWMGF AAMRTAARSG EAGEREPAGD LNRR
101: RHSGVDRAVV ESLPVFRFGS LQGQKEGLEC AVCLSRFEPT EALRLLPKCR HGFHVECVDT WLDAHSTCPL CRVRVDPEDV LLVPRSVPES HGGGGGEKAD
201: TKGGGDGATT VAPNPFGRRI SGRHSSAGER SSEPLQIVDK LLPTEATEDR EAFERRHSHR IVVSDVDVRL DRWSDLRPTD LLFLRREMII TESGRFSASK
301: AVRALSSSTA PGDADAAASR CASEIAGVHR MPSGRANPTG AGGARRAAEE ERTLRRWMGF AAMRTAARSG EAGEREPAGD LNRR
001: MSSSSLILLF STLSLFLNVS LADNHTAVVI TTSDTPPPLP PPSPPPRHNF TSSLMPGIAV VIAVLTAFFS LTFLLLLYVK HCKRRNGSVY VNHPQRFAIT
101: RYGGGYYNGG GVVGGRKNSG IDRSVIESLP VFRFGALSGH KDGLECAVCL ARFEPTEVLR LLPKCKHAFH VECVDTWLDA HSTCPLCRYR VDPEDILLIG
201: DCNSWFELQF SKDESNSVNN NPPGLTRFIP VSRISGRHSS AGERASRLNE IRTSSSYKSN PMSFRRSLDS SLKVNDAGEE KSESVAVNCL DRLQRKDGLL
301: LIPNRESFEG RFEHRIIISG GNRDDQRWSE VRPSDLLYLR SEMILSDCRK LAAAEGGRDV INGRSVSELT GIERRRRWGG EPRQRQATAV ISRWLAWSHR
401: ASASSIV
101: RYGGGYYNGG GVVGGRKNSG IDRSVIESLP VFRFGALSGH KDGLECAVCL ARFEPTEVLR LLPKCKHAFH VECVDTWLDA HSTCPLCRYR VDPEDILLIG
201: DCNSWFELQF SKDESNSVNN NPPGLTRFIP VSRISGRHSS AGERASRLNE IRTSSSYKSN PMSFRRSLDS SLKVNDAGEE KSESVAVNCL DRLQRKDGLL
301: LIPNRESFEG RFEHRIIISG GNRDDQRWSE VRPSDLLYLR SEMILSDCRK LAAAEGGRDV INGRSVSELT GIERRRRWGG EPRQRQATAV ISRWLAWSHR
401: ASASSIV
Arabidopsis Description
ATL43ATL43 [Source:UniProtKB/TrEMBL;Acc:A0A178ULT1]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.