Factsheet for VIT_11s0052g00530.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98867	Canola	endoplasmic reticulum, golgi	43.11	55.81
CDX70126	Canola	plasma membrane	48.36	54.84
AT5G05810.1	Thale cress	endoplasmic reticulum, golgi	48.8	54.79
Bra009136.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	47.7	53.96
KRH62179	Soybean	plasma membrane	37.64	51.19
PGSC0003DMT400078951	Potato	plasma membrane	41.79	45.26
Solyc07g007440.1.1	Tomato	plasma membrane, vacuole	41.14	44.76
Zm00001d014612_P001	Maize	peroxisome	37.86	43.58
Os06t0695900-01	Rice	endoplasmic reticulum, vacuole	37.2	42.61
GSMUA_Achr9P13810_001	Banana	golgi, mitochondrion, plastid, vacuole	33.7	41.85
EER90301	Sorghum	endoplasmic reticulum, golgi, vacuole	36.76	41.79
KRH70712	Soybean	endoplasmic reticulum, extracellular, vacuole	19.26	41.31
TraesCSU01G093700.1	Wheat	plastid	35.67	40.95
TraesCS7D01G420000.1	Wheat	plastid	35.67	40.65
GSMUA_Achr3P05190_001	Banana	endoplasmic reticulum, golgi, plastid	34.14	40.62
TraesCS7B01G327800.1	Wheat	plastid	35.67	40.55
HORVU7Hr1G098470.1	Barley	plastid	35.45	40.5
VIT_11s0016g03420.t01	Wine grape	plastid	28.45	27.72
VIT_18s0001g06670.t01	Wine grape	extracellular, plasma membrane, vacuole	16.19	18.59
VIT_14s0128g00120.t01	Wine grape	plasma membrane, plastid, vacuole	15.75	17.14

Protein Annotations

EntrezGene:100259882	wikigene:100259882	MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	ProteinID:CBI17870	ProteinID:CBI17870.3
UniProt:D7SQD9	EMBL:FN594964	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016567	GO:GO:0016702	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161
GO:GO:0046872	GO:GO:0055114	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100259882
wikigene:LOC100259882	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF78	SMART:SM00184
SUPFAM:SSF57850	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI0001BE17C9	ArrayExpress:VIT_11s0052g00530	EnsemblPlantsGene:VIT_11s0052g00530
EnsemblPlants:VIT_11s0052g00530.t01	RefSeq:XP_002267344	RefSeq:XP_002267344.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chr11:-:17936593..17938168

Molecular Weight (calculated)

51484.6 Da

IEP (calculated)

9.820

GRAVY (calculated)

-0.334

Length

457 amino acids

Sequence
(BLAST)

001: MSLLGFSCLV FWLFFCVDGG VGADDVVVVA ANPSQSPPLP PPALPRPNFS PFRPSIAVIV GVLTTMFSIT FLLLLYAKHC KRGNGVVYTG TPPLSSAARK
101: NSGIDRTVIE SLPVFRFASL RGQKDGLECA VCLNRFEPTE ILRLLPKCKH AFHVECVDTW LDAHSTCPLC RYRVDPEDIL LVEEPKISVA PPPEPDPPEV
201: EKPDAEPRNP EVRRVSGRHS SAGERRSGLV QIVLHKPDET TSSRRSLDSS SSSSRKRNEP VAVGCFDRPR KDELLLTSED RNSFERRLDH RIIVSAAGSG
301: GFHQRWSDVQ PSDLLYLRSE MIISDNRRLS SCHGTIEGGS WSGRSVINSR SVSEITGLSR LGSNYHHLDR HHQQRQAGVV SRWLAWISQS RPSVRSERAG
401: RRHGYSRRLV MTNQHVDHKG NAWNHWRATS FLYLIFFKKI LFISRIYIRC HVGYFFK

Best Arabidopsis Sequence Match ( AT5G05810.1 )
(BLAST)

001: MSSSSLILLF STLSLFLNVS LADNHTAVVI TTSDTPPPLP PPSPPPRHNF TSSLMPGIAV VIAVLTAFFS LTFLLLLYVK HCKRRNGSVY VNHPQRFAIT
101: RYGGGYYNGG GVVGGRKNSG IDRSVIESLP VFRFGALSGH KDGLECAVCL ARFEPTEVLR LLPKCKHAFH VECVDTWLDA HSTCPLCRYR VDPEDILLIG
201: DCNSWFELQF SKDESNSVNN NPPGLTRFIP VSRISGRHSS AGERASRLNE IRTSSSYKSN PMSFRRSLDS SLKVNDAGEE KSESVAVNCL DRLQRKDGLL
301: LIPNRESFEG RFEHRIIISG GNRDDQRWSE VRPSDLLYLR SEMILSDCRK LAAAEGGRDV INGRSVSELT GIERRRRWGG EPRQRQATAV ISRWLAWSHR
401: ASASSIV

Arabidopsis Description

ATL43ATL43 [Source:UniProtKB/TrEMBL;Acc:A0A178ULT1]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.