Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 6
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400015077 | |
| PGSC0003DMT400050482 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72200.1 | PGSC0003DMT400015077 | AT5G22290.1 | 21798944 |
| AT1G72200.1 | PGSC0003DMT400050482 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g074820.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 90.28 | 89.82 |
| PGSC0003DMT400045807 | Potato | plasma membrane | 39.39 | 40.74 |
| KRH52998 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 31.97 | 37.43 |
| KRH72413 | Soybean | cytosol, golgi, vacuole | 35.55 | 37.17 |
| KRH62285 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 32.23 | 37.06 |
| KRH16796 | Soybean | cytosol, endoplasmic reticulum, plasma membrane, plastid | 35.81 | 36.94 |
| CDX82175 | Canola | extracellular | 20.72 | 34.62 |
| CDY62007 | Canola | golgi, plasma membrane | 32.99 | 34.31 |
| Bra003887.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 31.46 | 34.26 |
| Bra040855.1-P | Field mustard | golgi, plasma membrane | 32.48 | 33.78 |
| CDY21367 | Canola | golgi, plasma membrane | 32.48 | 33.78 |
| GSMUA_Achr7P12810_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 26.34 | 33.77 |
| CDX82179 | Canola | plasma membrane | 29.92 | 33.33 |
| AT1G22500.1 | Thale cress | plasma membrane | 32.48 | 33.33 |
| VIT_18s0001g06670.t01 | Wine grape | extracellular, plasma membrane, vacuole | 33.5 | 32.91 |
| GSMUA_Achr5P17910_001 | Banana | golgi, plasma membrane, vacuole | 28.64 | 32.46 |
| Bra012330.1-P | Field mustard | golgi, plasma membrane | 28.39 | 32.27 |
| CDY70284 | Canola | plasma membrane | 31.97 | 32.13 |
| PGSC0003DMT400001221 | Potato | vacuole | 15.35 | 32.09 |
| PGSC0003DMT400046825 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 32.48 | 31.91 |
| CDX82176 | Canola | extracellular | 29.67 | 31.78 |
| CDY03651 | Canola | plasma membrane | 32.74 | 31.76 |
| Bra008016.1-P | Field mustard | plasma membrane | 32.74 | 31.76 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 28.64 | 31.73 |
| PGSC0003DMT400073575 | Potato | extracellular, plasma membrane | 34.27 | 30.95 |
| HORVU5Hr1G069980.1 | Barley | plasma membrane | 30.18 | 30.73 |
| Zm00001d005936_P001 | Maize | plasma membrane | 30.69 | 30.53 |
| GSMUA_Achr3P20400_001 | Banana | mitochondrion | 26.85 | 30.52 |
| Os09t0468300-00 | Rice | golgi, plasma membrane | 30.18 | 30.49 |
| AT1G72200.1 | Thale cress | plasma membrane | 31.46 | 30.45 |
| GSMUA_Achr10P... | Banana | plasma membrane | 30.18 | 30.41 |
| TraesCS5D01G254900.1 | Wheat | golgi, plasma membrane | 30.43 | 30.36 |
| TraesCS5B01G245800.1 | Wheat | plasma membrane | 30.43 | 30.05 |
| GSMUA_Achr9P15010_001 | Banana | endoplasmic reticulum, plasma membrane | 27.37 | 29.89 |
| EER99041 | Sorghum | endoplasmic reticulum, plasma membrane | 31.46 | 29.85 |
| TraesCS5A01G248100.1 | Wheat | plasma membrane | 30.18 | 29.72 |
| GSMUA_Achr3P06680_001 | Banana | mitochondrion, plastid | 29.41 | 29.64 |
| GSMUA_AchrUn_... | Banana | plastid | 27.11 | 29.44 |
| Zm00001d020789_P001 | Maize | plasma membrane | 29.92 | 29.4 |
| GSMUA_Achr6P30500_001 | Banana | plasma membrane | 21.74 | 29.11 |
| Bra008015.1-P | Field mustard | plasma membrane | 29.41 | 29.04 |
| CDY03652 | Canola | plasma membrane | 29.41 | 29.04 |
| TraesCS3D01G495500.1 | Wheat | vacuole | 28.64 | 29.02 |
| HORVU4Hr1G022090.1 | Barley | endoplasmic reticulum, golgi, plasma membrane | 15.6 | 28.77 |
| HORVU4Hr1G080840.1 | Barley | cytosol | 17.39 | 28.69 |
| KRH72412 | Soybean | nucleus, plasma membrane, plastid | 27.37 | 27.72 |
| TraesCS6D01G113000.1 | Wheat | golgi | 27.62 | 26.93 |
| EES18560 | Sorghum | golgi, plasma membrane | 26.85 | 26.72 |
| TraesCS3B01G549900.1 | Wheat | vacuole | 21.48 | 26.67 |
| KRH16794 | Soybean | plasma membrane | 26.6 | 26.53 |
| TraesCS6B01G151000.1 | Wheat | extracellular, golgi, plasma membrane | 27.37 | 26.49 |
| Zm00001d031261_P001 | Maize | golgi | 25.32 | 26.26 |
| Zm00001d037192_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 28.13 | 26.13 |
| TraesCS6A01G122800.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 27.11 | 26.11 |
| Zm00001d018122_P001 | Maize | vacuole | 27.88 | 26.01 |
| Zm00001d052189_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 27.37 | 25.78 |
| Os08t0484200-01 | Rice | golgi | 27.11 | 25.67 |
| TraesCS6B01G346000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 26.34 | 25.62 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 15.35 | 25.21 |
| TraesCS6D01G294800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 26.09 | 25.19 |
| HORVU6Hr1G077610.1 | Barley | plasma membrane | 26.09 | 25.12 |
| OQU85775 | Sorghum | golgi, plasma membrane, vacuole | 27.11 | 25.06 |
| HORVU6Hr1G022590.1 | Barley | golgi, mitochondrion | 25.83 | 25.0 |
| TraesCS7B01G081700.1 | Wheat | golgi | 26.34 | 24.88 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 15.09 | 24.79 |
| TraesCS7D01G178000.1 | Wheat | golgi | 25.83 | 24.75 |
| TraesCS6A01G315600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 25.58 | 24.69 |
| Os03t0188200-01 | Rice | golgi | 22.25 | 24.65 |
| TraesCS4A01G104900.1 | Wheat | mitochondrion | 24.3 | 24.55 |
| TraesCS7A01G176700.1 | Wheat | golgi | 25.83 | 24.34 |
| Os02t0759400-01 | Rice | endoplasmic reticulum, golgi, mitochondrion, plastid | 27.11 | 24.26 |
| Os06t0218300-01 | Rice | endoplasmic reticulum, extracellular, golgi | 27.37 | 24.21 |
| HORVU4Hr1G078260.1 | Barley | plasma membrane | 21.74 | 23.81 |
| HORVU4Hr1G057610.1 | Barley | plastid | 25.06 | 23.79 |
| TraesCS4D01G302600.1 | Wheat | plasma membrane | 21.48 | 23.66 |
| EER92732 | Sorghum | golgi | 22.25 | 23.64 |
| TraesCS4B01G304400.1 | Wheat | plasma membrane | 21.23 | 23.38 |
| TraesCS4D01G200100.1 | Wheat | plastid | 24.55 | 23.19 |
| Zm00001d048230_P001 | Maize | golgi | 22.51 | 23.16 |
| TraesCS4A01G404600.1 | Wheat | plasma membrane | 20.97 | 23.1 |
| Zm00001d027983_P001 | Maize | plasma membrane, plastid | 20.97 | 22.65 |
| KXG39223 | Sorghum | golgi, plasma membrane, plastid, vacuole | 21.99 | 22.22 |
| Zm00001d029395_P001 | Maize | plasma membrane, plastid | 21.74 | 22.19 |
| TraesCS4B01G199100.1 | Wheat | plastid | 24.55 | 21.48 |
| Os03t0391100-00 | Rice | endoplasmic reticulum, golgi | 22.76 | 20.46 |
| OQU76061 | Sorghum | cytosol, peroxisome, plasma membrane | 28.39 | 20.37 |
| HORVU7Hr1G036380.2 | Barley | endoplasmic reticulum | 21.48 | 20.19 |
| PGSC0003DMT400070587 | Potato | plastid | 16.37 | 18.6 |
| PGSC0003DMT400078951 | Potato | plasma membrane | 19.95 | 18.48 |
| PGSC0003DMT400000810 | Potato | plasma membrane | 16.37 | 17.3 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400005472 | EnsemblPlantsGene:PGSC0003DMG400002135 | Gene3D:3.30.40.10 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF414 |
| PFAM:PF13639 | PFscan:PS50089 | PGSC:PGSC0003DMG400002135 | SEG:seg | SignalP:SignalP-TM | SMART:SM00184 |
| SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI0002957231 | UniProt:M0ZPX8 | MapMan:19.2.2.1.5.3.3 | : |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002135]
Coordinates
chr4:+:64377470..64378890
Molecular Weight (calculated)
43530.3 Da
IEP (calculated)
7.284
GRAVY (calculated)
-0.366
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIELSHGFC VIFLCFFLLV MGVISQSEIT PSPPPFSFDT KIKINPPTAI ILVTLISVFF AMGIVSVYVR QCADRRFASD FEYADEDSGR RGARSHGLDP
101: VVITSFPMFF YSDVKDHKIG KSALECAICL NEFEDVETLR LLPKCSHVFH PNCIDAWLFS HITCPVCRAN LLPDPGDFEK IATPGYYSNS GSPDPEFNNS
201: VHEVNIDINN IASPEVINIA QTPVHNRPPR ANSNITGKFP RSHSTGHSPV RPGEDRERFT LRLPEEVREK LINSGSNRAQ SNSLFPSERS MPKGYRSSSV
301: GTGSTRINHE NYERFNEEGR ADRWGFTTVP PFFSRGGSTR SSKDGNGAGD DITVVSKNLF KSVKSPFDRI FEKNSSGERS FDKLRLGSSS N
101: VVITSFPMFF YSDVKDHKIG KSALECAICL NEFEDVETLR LLPKCSHVFH PNCIDAWLFS HITCPVCRAN LLPDPGDFEK IATPGYYSNS GSPDPEFNNS
201: VHEVNIDINN IASPEVINIA QTPVHNRPPR ANSNITGKFP RSHSTGHSPV RPGEDRERFT LRLPEEVREK LINSGSNRAQ SNSLFPSERS MPKGYRSSSV
301: GTGSTRINHE NYERFNEEGR ADRWGFTTVP PFFSRGGSTR SSKDGNGAGD DITVVSKNLF KSVKSPFDRI FEKNSSGERS FDKLRLGSSS N
001: MVVMSRVSFY SSFLLLLLEV VVASSEFDDE GRTSFSPTTA IIMIVLVSVF FALGCISVYM RRCLQHALGM DSGGGPGNWL NVRQTTEPGL DASVIETFPT
101: FPYSTVKTLR IGKEALECPV CLNEFEDDET LRLIPQCCHV FHPGCIDAWL RSQTTCPLCR ANLVPVPGES VSSEIPGLAR ETGQNSLRTP IDDNRKRVLT
201: SPDERLIDSV AWTGNQSMPR KSMSTGWKLA ELYSPASSPG QPEENLDRYT LRLPQEIHDQ LVNSSLGKQG SKGQLALPQE RSSVRGFRTG SLGTEKNYFY
301: FERFDQDGRL DRRPFSITPP YHTRSIQSPD EIINASGNYQ DRAGAPKGLL LAIRSPFDRL FTGKKNAGER SYLQSGDASP V
101: FPYSTVKTLR IGKEALECPV CLNEFEDDET LRLIPQCCHV FHPGCIDAWL RSQTTCPLCR ANLVPVPGES VSSEIPGLAR ETGQNSLRTP IDDNRKRVLT
201: SPDERLIDSV AWTGNQSMPR KSMSTGWKLA ELYSPASSPG QPEENLDRYT LRLPQEIHDQ LVNSSLGKQG SKGQLALPQE RSSVRGFRTG SLGTEKNYFY
301: FERFDQDGRL DRRPFSITPP YHTRSIQSPD EIINASGNYQ DRAGAPKGLL LAIRSPFDRL FTGKKNAGER SYLQSGDASP V
Arabidopsis Description
ATL15E3 ubiquitin-protein ligase ATL15 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK92]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.