Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY12022 | Canola | plasma membrane | 95.47 | 95.47 |
Bra028075.1-P | Field mustard | plasma membrane | 94.62 | 94.62 |
AT1G35330.1 | Thale cress | endoplasmic reticulum | 68.27 | 73.48 |
CDX90713 | Canola | extracellular, golgi, plasma membrane | 46.74 | 48.67 |
CDY05049 | Canola | plasma membrane | 39.09 | 47.26 |
CDY31657 | Canola | extracellular, plasma membrane, plastid | 38.81 | 37.23 |
CDX84269 | Canola | endoplasmic reticulum, plasma membrane, plastid | 38.53 | 36.96 |
CDY31686 | Canola | nucleus | 9.92 | 33.33 |
CDX75097 | Canola | extracellular | 11.9 | 30.43 |
CDX80653 | Canola | plasma membrane | 25.78 | 30.03 |
CDY48058 | Canola | extracellular | 11.61 | 29.71 |
CDX90377 | Canola | extracellular, golgi | 25.78 | 29.55 |
CDY39477 | Canola | extracellular | 25.5 | 29.03 |
CDX86162 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 24.93 | 28.95 |
GSMUA_Achr5P17910_001 | Banana | golgi, plasma membrane, vacuole | 28.05 | 28.7 |
CDX86163 | Canola | plasma membrane | 24.36 | 28.67 |
CDY19719 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 28.05 | 28.29 |
CDY53236 | Canola | plasma membrane | 27.76 | 28.24 |
GSMUA_Achr6P30500_001 | Banana | plasma membrane | 23.23 | 28.08 |
HORVU4Hr1G080840.1 | Barley | cytosol | 18.7 | 27.85 |
CDX99986 | Canola | plasma membrane | 27.48 | 27.79 |
GSMUA_Achr7P12810_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 23.8 | 27.54 |
CDX84270 | Canola | cytosol, plastid, vacuole | 23.8 | 26.84 |
CDY31656 | Canola | cytosol, endoplasmic reticulum, plastid | 23.51 | 26.52 |
CDY25038 | Canola | plasma membrane | 27.76 | 26.49 |
GSMUA_Achr3P20400_001 | Banana | mitochondrion | 25.78 | 26.45 |
CDY05577 | Canola | plasma membrane | 28.33 | 26.18 |
CDY62007 | Canola | golgi, plasma membrane | 27.76 | 26.06 |
CDY21367 | Canola | golgi, plasma membrane | 27.48 | 25.8 |
GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 25.5 | 25.5 |
GSMUA_Achr9P15010_001 | Banana | endoplasmic reticulum, plasma membrane | 25.78 | 25.42 |
CDY18787 | Canola | plasma membrane | 27.76 | 25.32 |
CDX82175 | Canola | extracellular | 16.71 | 25.21 |
GSMUA_Achr10P... | Banana | plasma membrane | 27.48 | 25.0 |
GSMUA_Achr3P06680_001 | Banana | mitochondrion, plastid | 27.48 | 25.0 |
HORVU4Hr1G022090.1 | Barley | endoplasmic reticulum, golgi, plasma membrane | 15.01 | 25.0 |
CDX82179 | Canola | plasma membrane | 24.65 | 24.79 |
Zm00001d005936_P001 | Maize | plasma membrane | 27.48 | 24.68 |
CDY70284 | Canola | plasma membrane | 27.2 | 24.68 |
CDY05713 | Canola | extracellular | 10.2 | 24.49 |
HORVU5Hr1G069980.1 | Barley | plasma membrane | 26.63 | 24.48 |
CDX82176 | Canola | extracellular | 25.21 | 24.38 |
CDY03651 | Canola | plasma membrane | 27.76 | 24.32 |
TraesCS5B01G245800.1 | Wheat | plasma membrane | 27.2 | 24.24 |
TraesCS5D01G254900.1 | Wheat | golgi, plasma membrane | 26.91 | 24.23 |
TraesCS3D01G495500.1 | Wheat | vacuole | 26.35 | 24.09 |
Os09t0468300-00 | Rice | golgi, plasma membrane | 26.35 | 24.03 |
CDY62419 | Canola | cytosol | 10.2 | 24.0 |
CDY04519 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 9.63 | 23.94 |
CDY03652 | Canola | plasma membrane | 26.63 | 23.74 |
TraesCS5A01G248100.1 | Wheat | plasma membrane | 26.63 | 23.68 |
Zm00001d020789_P001 | Maize | plasma membrane | 26.63 | 23.62 |
GSMUA_AchrUn_... | Banana | plastid | 24.08 | 23.61 |
EER99041 | Sorghum | endoplasmic reticulum, plasma membrane | 27.48 | 23.54 |
TraesCS6B01G151000.1 | Wheat | extracellular, golgi, plasma membrane | 26.63 | 23.27 |
TraesCS6D01G113000.1 | Wheat | golgi | 26.35 | 23.19 |
HORVU6Hr1G022590.1 | Barley | golgi, mitochondrion | 26.35 | 23.02 |
TraesCS6A01G122800.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 26.35 | 22.91 |
CDX78812 | Canola | plasma membrane | 18.98 | 22.79 |
TraesCS3B01G549900.1 | Wheat | vacuole | 20.11 | 22.54 |
CDY44502 | Canola | plasma membrane | 18.7 | 22.45 |
Zm00001d037192_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 26.35 | 22.09 |
CDY03202 | Canola | plasma membrane | 17.56 | 22.06 |
CDX77681 | Canola | golgi, mitochondrion, plasma membrane, plastid | 17.85 | 21.95 |
CDY63052 | Canola | golgi, mitochondrion, plasma membrane, plastid | 17.85 | 21.95 |
CDY12527 | Canola | extracellular, plasma membrane, vacuole | 14.73 | 21.85 |
TraesCS7D01G178000.1 | Wheat | golgi | 25.21 | 21.81 |
TraesCS7B01G081700.1 | Wheat | golgi | 25.5 | 21.74 |
CDY35174 | Canola | plasma membrane | 17.28 | 21.71 |
TraesCS7A01G176700.1 | Wheat | golgi | 25.5 | 21.69 |
Zm00001d052189_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 25.5 | 21.69 |
CDY01502 | Canola | plasma membrane | 18.13 | 21.55 |
Zm00001d018122_P001 | Maize | vacuole | 25.5 | 21.48 |
EES18560 | Sorghum | golgi, plasma membrane | 23.8 | 21.37 |
Os08t0484200-01 | Rice | golgi | 24.65 | 21.07 |
OQU85775 | Sorghum | golgi, plasma membrane, vacuole | 25.21 | 21.04 |
CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 14.16 | 21.01 |
Zm00001d031261_P001 | Maize | golgi | 22.38 | 20.95 |
Os06t0218300-01 | Rice | endoplasmic reticulum, extracellular, golgi | 26.06 | 20.81 |
Os03t0188200-01 | Rice | golgi | 20.68 | 20.68 |
CDY50446 | Canola | mitochondrion | 13.88 | 20.5 |
Os02t0759400-01 | Rice | endoplasmic reticulum, golgi, mitochondrion, plastid | 24.65 | 19.91 |
TraesCS6B01G346000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 22.66 | 19.9 |
HORVU4Hr1G078260.1 | Barley | plasma membrane | 19.55 | 19.33 |
TraesCS6A01G315600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 22.1 | 19.26 |
TraesCS6D01G294800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 22.1 | 19.26 |
HORVU6Hr1G077610.1 | Barley | plasma membrane | 22.1 | 19.21 |
TraesCS4A01G104900.1 | Wheat | mitochondrion | 20.96 | 19.12 |
HORVU4Hr1G057610.1 | Barley | plastid | 22.1 | 18.93 |
TraesCS4D01G200100.1 | Wheat | plastid | 21.81 | 18.6 |
TraesCS4A01G404600.1 | Wheat | plasma membrane | 18.7 | 18.59 |
TraesCS4B01G304400.1 | Wheat | plasma membrane | 18.41 | 18.31 |
TraesCS4D01G302600.1 | Wheat | plasma membrane | 18.41 | 18.31 |
Zm00001d029395_P001 | Maize | plasma membrane, plastid | 19.83 | 18.28 |
CDY27787 | Canola | extracellular, plasma membrane, vacuole | 15.58 | 18.27 |
Zm00001d027983_P001 | Maize | plasma membrane, plastid | 18.7 | 18.23 |
EER92732 | Sorghum | golgi | 18.98 | 18.21 |
Zm00001d048230_P001 | Maize | golgi | 19.55 | 18.16 |
KXG39223 | Sorghum | golgi, plasma membrane, plastid, vacuole | 19.83 | 18.09 |
CDY05145 | Canola | plasma membrane | 15.01 | 17.85 |
HORVU7Hr1G036380.2 | Barley | endoplasmic reticulum | 20.4 | 17.31 |
OQU76061 | Sorghum | cytosol, peroxisome, plasma membrane | 26.63 | 17.25 |
Os03t0391100-00 | Rice | endoplasmic reticulum, golgi | 21.25 | 17.24 |
CDY70750 | Canola | extracellular, mitochondrion, nucleus | 14.73 | 17.16 |
TraesCS4B01G199100.1 | Wheat | plastid | 21.53 | 17.0 |
CDY13888 | Canola | plasma membrane | 17.0 | 16.22 |
CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 17.0 | 15.67 |
CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 17.85 | 15.4 |
CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 16.15 | 15.36 |
CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 17.56 | 15.2 |
CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 17.85 | 15.11 |
CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 17.56 | 14.87 |
CDX98867 | Canola | endoplasmic reticulum, golgi | 14.73 | 14.73 |
CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 17.28 | 14.52 |
CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 17.0 | 14.46 |
CDX70126 | Canola | plasma membrane | 16.43 | 14.39 |
CDX90435 | Canola | nucleus | 17.85 | 10.26 |
CDY05714 | Canola | cytosol | 3.4 | 5.63 |
CDY31685 | Canola | cytosol | 0.28 | 4.55 |
Protein Annotations
EnsemblPlants:CDY03116 | EnsemblPlantsGene:GSBRNA2T00115496001 | Gene3D:3.30.40.10 | GO:A0A078EPJ0 | InterPro:IPR001841 | InterPro:IPR013083 |
InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF414 | PFAM:PF13639 | PFscan:PS50089 |
ProteinID:CDY03116 | ProteinID:CDY03116.1 | SEG:seg | SignalP:SignalP-TM | SMART:SM00184 | SUPFAM:SSF57850 |
TMHMM:TMhelix | UniParc:UPI0004EDDA19 | MapMan:19.2.2.1.5.3.3 | : | : | : |
Description
BnaC06g08570D
Coordinates
chrLK031940:-:240932..241993
Molecular Weight (calculated)
39830.0 Da
IEP (calculated)
10.463
GRAVY (calculated)
-0.503
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNRKSKILP RYYVIYLVLL VFQVTGQPQP GAIGPYGRQL RPNQVPAVII GMLIFSLLFS MIACCVCYKY RSMSPRGTNS DTDEEGRGGV PWTRRTSRGV
101: EKDVIMSFPS FLYSQVKGLK IGKGGVECAI CLNEFDDGEE LRLMPGCSHA FHAPCIDVWL SSRSTCPVCR DNLAPKPGTT IYPFIRPRTN QDMDLEMANA
201: RRSVLESQDV RLLDGLTRSN NNRANRLPRP RSTGSSNWQI TEILVPRSHS TGHSLIPLRE NLDRFTLQLP EELRRQLSQR TLPQARSSRQ GYRSGSVGSK
301: RRGIPHGRGY NHRTISLSFS FSFQSASLQS EKGKNKEFGE GSFERLRPEM PLS
101: EKDVIMSFPS FLYSQVKGLK IGKGGVECAI CLNEFDDGEE LRLMPGCSHA FHAPCIDVWL SSRSTCPVCR DNLAPKPGTT IYPFIRPRTN QDMDLEMANA
201: RRSVLESQDV RLLDGLTRSN NNRANRLPRP RSTGSSNWQI TEILVPRSHS TGHSLIPLRE NLDRFTLQLP EELRRQLSQR TLPQARSSRQ GYRSGSVGSK
301: RRGIPHGRGY NHRTISLSFS FSFQSASLQS EKGKNKEFGE GSFERLRPEM PLS
001: MMTIGKSPIL LHHHVIFLLL LVLQVSGQHQ PRTTAPPYIA QRPNQVPAVI IAMLMFTLLF SMLACCVCYK YTNTSPHGTS SDTEEGGHGE VAFTRRTSRG
101: LGKDVINSFP SFLYSQVKGL KIGKGGVECA ICLNEFEDEE TLRLMPPCSH AFHASCIDVW LSSRSTCPVC RASLPPKPGS DQNSLYPFIR PHDNQDMDLE
201: NVTARRSVLE SPDVRLLDRL SWSNNTGANT PPRSRSTGLS NWRITELLFP RSHSTGHSLV PRVENLDRFT LQLPEEVRRQ LSHMKTLPQA RSSREGYRSG
301: SVGSERRGKG KEKEFGEGSF DRLKAEMV
101: LGKDVINSFP SFLYSQVKGL KIGKGGVECA ICLNEFEDEE TLRLMPPCSH AFHASCIDVW LSSRSTCPVC RASLPPKPGS DQNSLYPFIR PHDNQDMDLE
201: NVTARRSVLE SPDVRLLDRL SWSNNTGANT PPRSRSTGLS NWRITELLFP RSHSTGHSLV PRVENLDRFT LQLPEEVRRQ LSHMKTLPQA RSSREGYRSG
301: SVGSERRGKG KEKEFGEGSF DRLKAEMV
Arabidopsis Description
RING/U-box superfamily protein [Source:TAIR;Acc:AT1G35330]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.