CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62419	Canola	cytosol	75.24	52.67
CDY04519	Canola	endoplasmic reticulum, extracellular, plasma membrane	21.9	16.2
CDY48058	Canola	extracellular	20.95	15.94
CDX75097	Canola	extracellular	20.0	15.22
Zm00001d026494_P001	Maize	plastid	24.76	12.81
TraesCS2A01G501100.1	Wheat	plastid	23.81	12.69
TraesCS2B01G529100.1	Wheat	plastid	23.81	12.69
TraesCS2D01G501500.1	Wheat	plastid	23.81	12.69
CDX82175	Canola	extracellular	27.62	12.39
CDY05049	Canola	plasma membrane	34.29	12.33
CDY01502	Canola	plasma membrane	34.29	12.12
CDY35174	Canola	plasma membrane	32.38	12.1
CDY03202	Canola	plasma membrane	32.38	12.1
CDX78812	Canola	plasma membrane	33.33	11.9
CDY44502	Canola	plasma membrane	33.33	11.9
CDY63052	Canola	golgi, mitochondrion, plasma membrane, plastid	31.43	11.5
CDX77681	Canola	golgi, mitochondrion, plasma membrane, plastid	31.43	11.5
CDX90377	Canola	extracellular, golgi	32.38	11.04
CDY39477	Canola	extracellular	32.38	10.97
OQU82489	Sorghum	plasma membrane, vacuole	23.81	10.55
CDX86162	Canola	endoplasmic reticulum, plasma membrane, vacuole	30.48	10.53
CDY53236	Canola	plasma membrane	34.29	10.37
CDX80653	Canola	plasma membrane	29.52	10.23
CDX90713	Canola	extracellular, golgi, plasma membrane	32.38	10.03
CDX86163	Canola	plasma membrane	28.57	10.0
CDY03116	Canola	plasma membrane	33.33	9.92
CDY12022	Canola	plasma membrane	32.38	9.63
CDY25038	Canola	plasma membrane	33.33	9.46
CDX99986	Canola	plasma membrane	31.43	9.46
CDY19719	Canola	endoplasmic reticulum, plasma membrane, vacuole	31.43	9.43
CDY18787	Canola	plasma membrane	34.29	9.3
CDY05577	Canola	plasma membrane	33.33	9.16
CDY05713	Canola	extracellular	12.38	8.84
CDY31657	Canola	extracellular, plasma membrane, plastid	30.48	8.7
CDX84269	Canola	endoplasmic reticulum, plasma membrane, plastid	30.48	8.7
CDX82179	Canola	plasma membrane	28.57	8.55
CDY03652	Canola	plasma membrane	31.43	8.33
CDX84270	Canola	cytosol, plastid, vacuole	24.76	8.31
CDY31656	Canola	cytosol, endoplasmic reticulum, plastid	24.76	8.31
CDX82176	Canola	extracellular	28.57	8.22
CDY35921	Canola	endoplasmic reticulum, extracellular, plasma membrane	28.57	8.09
CDY62007	Canola	golgi, plasma membrane	28.57	7.98
CDY13888	Canola	plasma membrane	27.62	7.84
CDY21367	Canola	golgi, plasma membrane	27.62	7.71
CDY70284	Canola	plasma membrane	28.57	7.71
CDX81954	Canola	endoplasmic reticulum, plasma membrane, vacuole	27.62	7.57
CDX98867	Canola	endoplasmic reticulum, golgi	24.76	7.37
CDY03651	Canola	plasma membrane	27.62	7.2
CDX97460	Canola	endoplasmic reticulum, extracellular, plasma membrane	27.62	7.11
CDY66475	Canola	endoplasmic reticulum, plasma membrane	27.62	7.09
CDX92900	Canola	endoplasmic reticulum, plasma membrane	27.62	6.99
CDY06859	Canola	endoplasmic reticulum, plasma membrane	27.62	6.95
CDY35230	Canola	endoplasmic reticulum, plasma membrane	26.67	6.71
CDX70126	Canola	plasma membrane	24.76	6.45
CDY50930	Canola	endoplasmic reticulum, plasma membrane	25.71	6.43
CDX90435	Canola	nucleus	34.29	5.86
CDY70750	Canola	extracellular, mitochondrion, nucleus	14.29	4.95
CDY05714	Canola	cytosol	5.71	2.82
CDY50446	Canola	mitochondrion	3.81	1.67
CDY05145	Canola	plasma membrane	3.81	1.35
CDY27787	Canola	extracellular, plasma membrane, vacuole	3.81	1.33
CDY12527	Canola	extracellular, plasma membrane, vacuole	2.86	1.26
CDY25739	Canola	endoplasmic reticulum, extracellular, plasma membrane	2.86	1.26
CDY31685	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY31686	EnsemblPlantsGene:GSBRNA2T00050299001	Gene3D:3.30.40.10	GO:A0A078H1M8	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF305	PFAM:PF13639	PFscan:PS50089
ProteinID:CDY31686	ProteinID:CDY31686.1	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EED1C3	UniProt:A0A078H1M8
MapMan:19.2.2.1.5.3.3	:	:	:	:	:

Description

BnaA05g08610DBnaA05g08610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1M8]

Coordinates

chrLK032277:-:287106..287512

Molecular Weight (calculated)

11873.0 Da

IEP (calculated)

6.842

GRAVY (calculated)

-0.503

Length

105 amino acids

Sequence
(BLAST)

001: MKNQCTECAI CLSEFSDEDT VRLITVCRHG FHSICIDLWF ESHKTCPVCR CELDPGLVGS GSHESLHSTV TITIQDLNHD QENPRSASSS KRLTRRQCHV
101: RGERS

Best Arabidopsis Sequence Match ( AT2G35420.1 )
(BLAST)

001: MSSTTSIDSI PATAVFPSVS MPVTVVLTGV LLFVIFAGFF SLFLWQFLLN RLFTTWNLQR TPYGDLIHVA TPPENTGLDP FIIRSFPVFH YSSATKKNHG
101: TECAICLSEF SDEDTVRLIT VCRHPFHSNC IDLWFELHKT CPVCRCELDP GMIGSGRLES FHNTVTITIQ DINHDEENPP TAGSSKRLIE ASAWRFSRSH
201: STGHFMVKTT DANVKSKRRH YQTGSCVSFD ELTRYEGAGW QWLGDSSHIS RIEV

Arabidopsis Description

ATL28RING-H2 finger protein ATL28 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKR1]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.