Factsheet for TraesCS2B01G529100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
endoplasmic reticulum 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	endoplasmic reticulum, plasma membrane, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G501100.1	Wheat	plastid	96.95	96.95
TraesCS2D01G501500.1	Wheat	plastid	95.94	95.94
Zm00001d026494_P001	Maize	plastid	56.35	54.68
OQU82489	Sorghum	plasma membrane, vacuole	53.3	44.3
CDY31686	Canola	nucleus	12.69	23.81
TraesCS3B01G060000.1	Wheat	mitochondrion	22.34	18.88
TraesCS7B01G475300.1	Wheat	endoplasmic reticulum, plasma membrane	18.27	18.75
TraesCS5B01G442500.1	Wheat	golgi	24.87	14.45
TraesCS3B01G499500.1	Wheat	vacuole	25.38	14.41
TraesCS5B01G245800.1	Wheat	plasma membrane	28.93	14.39
TraesCS7B01G327800.1	Wheat	plastid	28.43	13.93
TraesCS6B01G151000.1	Wheat	extracellular, golgi, plasma membrane	28.43	13.86
TraesCS6B01G346000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	25.89	12.69
TraesCS2B01G336300.1	Wheat	extracellular, golgi, plasma membrane	23.86	12.37
TraesCS7B01G081700.1	Wheat	golgi	25.89	12.32
TraesCS1B01G479700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	26.4	12.04
TraesCS4B01G199100.1	Wheat	plastid	26.9	11.86
TraesCS4B01G304400.1	Wheat	plasma membrane	21.32	11.83
TraesCS3B01G549900.1	Wheat	vacuole	16.75	10.48
CDY31685	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS2B01G529100.1	EnsemblPlantsGene:TraesCS2B01G529100	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF78	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16486	TMHMM:TMhelix	MapMan:19.2.2.1.5.3.3	:

Description

No Description!

Coordinates

chr2B:+:723446610..723447203

Molecular Weight (calculated)

20607.0 Da

IEP (calculated)

6.962

GRAVY (calculated)

0.272

Length

197 amino acids

Sequence
(BLAST)

001: MIAMPSSASS TPAADVLGVP PPLPQPPGAD VSIIVGVLTG VLLGLFLFLI YAKHCRQRGA RGAAGRLGLG FRASSTCDRC CSGLSLSVVD ALPVVRFGDM
101: GGAAAAAQPE CAVCLGAFDA AADELLRVLP KCRHAFHADC VDTWLEAHST CPVCRRRVGK EDAFAVIPKL EAGADHGDAE WYPAREAEMQ IVVRRPA

Best Arabidopsis Sequence Match ( AT2G20030.1 )
(BLAST)

001: MNSPQEISIL FFFIIFLDYV SAQSPPPPNL YATSDLFKPS LAIITGVFSI VFTLTFVLLV YAKCFHNDLR SETDSDGERI RHDRLWQGLF NRSSRFSGLD
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV

Arabidopsis Description

ATL12Putative RING-H2 finger protein ATL12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL78]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.