Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 4
- endoplasmic reticulum 4
- extracellular 3
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024178.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 91.57 | 90.48 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 91.57 | 90.48 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 80.96 | 80.58 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 78.8 | 80.15 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 80.48 | 80.1 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 78.55 | 79.71 |
| AT4G28890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 80.96 | 77.78 |
| CDY05713 | Canola | extracellular | 22.41 | 63.27 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 53.49 | 59.84 |
| CDY13888 | Canola | plasma membrane | 53.25 | 59.73 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 53.01 | 57.44 |
| CDY05714 | Canola | cytosol | 27.23 | 53.05 |
| PGSC0003DMT400070587 | Potato | plastid | 43.37 | 52.33 |
| Solyc05g018310.1.1 | Tomato | extracellular, plasma membrane, vacuole | 39.76 | 50.93 |
| KRH39345 | Soybean | endoplasmic reticulum, vacuole | 46.51 | 46.06 |
| KRH76331 | Soybean | endoplasmic reticulum | 46.51 | 45.31 |
| PGSC0003DMT400000810 | Potato | plasma membrane | 40.0 | 44.86 |
| Solyc12g007320.1.1 | Tomato | plasma membrane | 39.52 | 43.04 |
| VIT_11s0016g03420.t01 | Wine grape | plastid | 47.23 | 41.79 |
| GSMUA_Achr9P06250_001 | Banana | endoplasmic reticulum, plasma membrane | 35.66 | 40.33 |
| GSMUA_Achr6P26720_001 | Banana | plasma membrane | 33.73 | 39.89 |
| GSMUA_Achr9P00230_001 | Banana | vacuole | 33.49 | 37.77 |
| GSMUA_Achr4P08120_001 | Banana | plasma membrane | 32.05 | 37.05 |
| HORVU1Hr1G095220.1 | Barley | golgi, plasma membrane | 31.33 | 32.99 |
| Zm00001d039216_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 30.84 | 32.74 |
| TraesCS1A01G444900.1 | Wheat | golgi, plasma membrane | 30.6 | 32.32 |
| CDX98867 | Canola | endoplasmic reticulum, golgi | 27.23 | 32.01 |
| GSMUA_Achr6P22700_001 | Banana | plasma membrane | 17.83 | 31.09 |
| Os05t0596500-01 | Rice | endoplasmic reticulum, plasma membrane | 28.19 | 30.39 |
| Zm00001d009777_P001 | Maize | extracellular, golgi, plasma membrane | 29.4 | 29.98 |
| TraesCS1B01G479700.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 31.08 | 29.86 |
| CDX70126 | Canola | plasma membrane | 28.92 | 29.78 |
| TraesCS1D01G453000.1 | Wheat | extracellular, plasma membrane | 30.84 | 29.49 |
| CDX75097 | Canola | extracellular | 9.64 | 28.99 |
| CDY48058 | Canola | extracellular | 9.4 | 28.26 |
| EES18815 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 32.05 | 28.12 |
| CDY31686 | Canola | nucleus | 6.99 | 27.62 |
| CDY04519 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 9.16 | 26.76 |
| CDX82175 | Canola | extracellular | 12.77 | 22.65 |
| CDX90377 | Canola | extracellular, golgi | 16.63 | 22.4 |
| CDY39477 | Canola | extracellular | 16.63 | 22.26 |
| CDY62419 | Canola | cytosol | 7.95 | 22.0 |
| CDX86162 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 15.66 | 21.38 |
| CDY53236 | Canola | plasma membrane | 17.83 | 21.33 |
| CDY63052 | Canola | golgi, mitochondrion, plasma membrane, plastid | 14.46 | 20.91 |
| CDY21367 | Canola | golgi, plasma membrane | 18.8 | 20.74 |
| CDY62007 | Canola | golgi, plasma membrane | 18.8 | 20.74 |
| CDX99986 | Canola | plasma membrane | 17.35 | 20.63 |
| CDY19719 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 17.11 | 20.29 |
| CDX77681 | Canola | golgi, mitochondrion, plasma membrane, plastid | 13.98 | 20.21 |
| CDY18787 | Canola | plasma membrane | 18.55 | 19.9 |
| CDY31656 | Canola | cytosol, endoplasmic reticulum, plastid | 14.94 | 19.81 |
| CDX80653 | Canola | plasma membrane | 14.46 | 19.8 |
| CDY70284 | Canola | plasma membrane | 18.31 | 19.54 |
| CDX84270 | Canola | cytosol, plastid, vacuole | 14.7 | 19.49 |
| CDY35174 | Canola | plasma membrane | 13.01 | 19.22 |
| CDY03202 | Canola | plasma membrane | 13.01 | 19.22 |
| CDY03651 | Canola | plasma membrane | 18.55 | 19.11 |
| CDX86163 | Canola | plasma membrane | 13.73 | 19.0 |
| CDY44502 | Canola | plasma membrane | 13.01 | 18.37 |
| CDX78812 | Canola | plasma membrane | 13.01 | 18.37 |
| CDY05049 | Canola | plasma membrane | 12.77 | 18.15 |
| CDY25038 | Canola | plasma membrane | 16.14 | 18.11 |
| CDX82179 | Canola | plasma membrane | 15.18 | 17.95 |
| CDX82176 | Canola | extracellular | 15.66 | 17.81 |
| CDY01502 | Canola | plasma membrane | 12.53 | 17.51 |
| CDY05577 | Canola | plasma membrane | 15.9 | 17.28 |
| CDY03116 | Canola | plasma membrane | 14.46 | 17.0 |
| CDY03652 | Canola | plasma membrane | 16.14 | 16.92 |
| CDY12022 | Canola | plasma membrane | 14.22 | 16.71 |
| CDX84269 | Canola | endoplasmic reticulum, plasma membrane, plastid | 14.7 | 16.58 |
| CDY31657 | Canola | extracellular, plasma membrane, plastid | 14.46 | 16.3 |
| CDX90713 | Canola | extracellular, golgi, plasma membrane | 13.25 | 16.22 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 8.19 | 14.29 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 7.71 | 13.45 |
| CDY05145 | Canola | plasma membrane | 7.95 | 11.11 |
| CDY27787 | Canola | extracellular, plasma membrane, vacuole | 7.95 | 10.96 |
| CDY70750 | Canola | extracellular, mitochondrion, nucleus | 7.47 | 10.23 |
| CDY50446 | Canola | mitochondrion | 5.3 | 9.21 |
| CDX90435 | Canola | nucleus | 12.53 | 8.47 |
| CDY31685 | Canola | cytosol | 0.24 | 4.55 |
Protein Annotations
| EnsemblPlants:CDX92900 | EnsemblPlantsGene:GSBRNA2T00154746001 | Gene3D:3.30.40.10 | GO:A0A078DU70 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF431 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDX92900 | ProteinID:CDX92900.1 | SignalP:SignalP-TM | SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix |
| UniParc:UPI0004EDECBC | MapMan:19.2.2.1.5.3.3 | : | : | : | : |
Description
BnaC07g41580D
Coordinates
chrLK031873:-:1413852..1416220
Molecular Weight (calculated)
47704.9 Da
IEP (calculated)
8.875
GRAVY (calculated)
-0.405
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MYQNIFFFFL TTLHSYYYVS AQRPAPPLTN GDLVANFEPS LAVVTVVLAI MFSLTFFLLV YAKCCHIDLR SRTGDGRRQD RRSIQGIFVN RSTNSSDRFS
101: GLDRTVIESL PLFRFSALKG SKQGLDCSVC LSKFESVEIL RLLPKCRHAF HVGCIDQWLE EHATCPLCRD RVSIDEEYSV YGNSFRFLNE SEVRKDSSLE
201: LYIERDEEVG ESSRFSIGDS FRKILKLGHK EKPLLDQHGN DKDERKLMHK FNHRIIVSDV VFKNRWSNVS SSDLMFLNSE MVSSISSERF SLVDRVKRGD
301: EDDGRGSLWI KEEKRMLENK LSSMKTMLLS ENGESGSKAR TVKVEPGRRS VSEITAIPRL SIAVHGDYSG STASTALETE RRRRLWLPIA RNTAQWFANK
401: ELRNQINRTH LHFDV
101: GLDRTVIESL PLFRFSALKG SKQGLDCSVC LSKFESVEIL RLLPKCRHAF HVGCIDQWLE EHATCPLCRD RVSIDEEYSV YGNSFRFLNE SEVRKDSSLE
201: LYIERDEEVG ESSRFSIGDS FRKILKLGHK EKPLLDQHGN DKDERKLMHK FNHRIIVSDV VFKNRWSNVS SSDLMFLNSE MVSSISSERF SLVDRVKRGD
301: EDDGRGSLWI KEEKRMLENK LSSMKTMLLS ENGESGSKAR TVKVEPGRRS VSEITAIPRL SIAVHGDYSG STASTALETE RRRRLWLPIA RNTAQWFANK
401: ELRNQINRTH LHFDV
001: MYQIFFFFLP LLHSYASAQT PPPFRNGDLV ANFEPSLAVV TGVLAIMFAL TFVLLVYAKC CHIDLRSGSG DRRRHDRRLR QGIFFNRSTA SSDRFSGLDK
101: TAIESLPLFR FSALKGSKQG LDCSVCLSKF ESVEILRLLP KCRHAFHIGC IDQWLEQHAT CPLCRDRVSM EEDSSVLTNG NSFRFLNQSE IREDSSLELY
201: IEREEEEERI HREELSGSSR FSIGESFRKI LKLGNKEKTL LDEHVNDKDE KKLMHKFNHR IVVSDVVFKN RWSNVSSSDL MFLNSEMVNS ISSERFSSLD
301: HVKRGDEEDQ IGILRIKEEM EAKRMLENKL TSMTTMFSSE NGDSGSKSRS VMIEPGRRSV SDITAVPRLS ISIHGDCSGS AAETASALQN GGNETEERRR
401: RLWLPIARKT AQWFANREKR SQINTTHQHF DV
101: TAIESLPLFR FSALKGSKQG LDCSVCLSKF ESVEILRLLP KCRHAFHIGC IDQWLEQHAT CPLCRDRVSM EEDSSVLTNG NSFRFLNQSE IREDSSLELY
201: IEREEEEERI HREELSGSSR FSIGESFRKI LKLGNKEKTL LDEHVNDKDE KKLMHKFNHR IVVSDVVFKN RWSNVSSSDL MFLNSEMVNS ISSERFSSLD
301: HVKRGDEEDQ IGILRIKEEM EAKRMLENKL TSMTTMFSSE NGDSGSKSRS VMIEPGRRSV SDITAVPRLS ISIHGDCSGS AAETASALQN GGNETEERRR
401: RLWLPIARKT AQWFANREKR SQINTTHQHF DV
Arabidopsis Description
ATL42E3 ubiquitin-protein ligase ATL42 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF85]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.