Factsheet for TraesCS1A01G192600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 3
golgi 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0574400-01	Rice	mitochondrion, plasma membrane, plastid	53.08	56.28
Zm00001d030038_P001	Maize	plastid	58.29	53.02
OQU92087	Sorghum	golgi, peroxisome, plastid	59.72	50.6
GSMUA_Achr4P12270_001	Banana	plastid	28.91	35.26
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane	27.96	35.12
TraesCS2A01G501100.1	Wheat	plastid	25.59	27.41
KRH53320	Soybean	mitochondrion	13.27	26.42
AT2G35420.1	Thale cress	plasma membrane, plastid	30.33	25.2
CDY62419	Canola	cytosol	16.59	23.33
Bra005343.1-P	Field mustard	plastid	30.33	22.94
PGSC0003DMT400001221	Potato	vacuole	19.43	21.93
KRH14610	Soybean	endoplasmic reticulum, nucleus, plastid	15.64	18.75
Bra017320.1-P	Field mustard	extracellular, nucleus, plasma membrane	29.38	18.45
Solyc11g066510.1.1	Tomato	nucleus	19.91	17.8
TraesCS3A01G051000.1	Wheat	vacuole	27.49	17.52
TraesCS7A01G551400.1	Wheat	golgi, plastid	18.96	16.39
KRH31340	Soybean	endoplasmic reticulum, plasma membrane	17.06	16.0
TraesCS3A01G459700.1	Wheat	vacuole	25.59	15.79
TraesCS4A01G404600.1	Wheat	plasma membrane	25.59	15.21
TraesCS5A01G248100.1	Wheat	plasma membrane	28.44	15.11
TraesCS7A01G176700.1	Wheat	golgi	28.44	14.46
TraesCS6A01G122800.1	Wheat	endoplasmic reticulum, golgi, mitochondrion	27.49	14.29
TraesCS2A01G318200.1	Wheat	endoplasmic reticulum, golgi, vacuole	25.59	14.21
TraesCS4A01G104900.1	Wheat	mitochondrion	24.64	13.44
TraesCS6A01G315600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	24.17	12.59
TraesCS1A01G444900.1	Wheat	golgi, plasma membrane	20.38	10.94

Protein Annotations

EnsemblPlants:TraesCS1A01G192600.1	EnsemblPlantsGene:TraesCS1A01G192600	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF419	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16461	TMHMM:TMhelix	MapMan:19.2.2.1.5.3.3	:

Description

No Description!

Coordinates

chr1A:+:347922445..347923080

Molecular Weight (calculated)

22581.0 Da

IEP (calculated)

6.778

GRAVY (calculated)

0.020

Length

211 amino acids

Sequence
(BLAST)

001: MAARRLLSAL DVRASHLPRP PPPPPSPAQQ GASFPMLLPV FLLFVLLLCF LSIFLLRDLL RFFSLWLRRR RRLQSSDADA ATGEEGEPAP APRKPAGLDP
101: AVIASFPTVR FEADAAGSAA PAECAVCLSE FAPGDAVRPL TVCRHAFHAA CIDSWLGAHT TCPVCRTDLD APPNEEIAFA EEHGHSGLTA AAVHEATGHR
201: TTSSPPATDH R

Best Arabidopsis Sequence Match ( AT2G35420.1 )
(BLAST)

001: MSSTTSIDSI PATAVFPSVS MPVTVVLTGV LLFVIFAGFF SLFLWQFLLN RLFTTWNLQR TPYGDLIHVA TPPENTGLDP FIIRSFPVFH YSSATKKNHG
101: TECAICLSEF SDEDTVRLIT VCRHPFHSNC IDLWFELHKT CPVCRCELDP GMIGSGRLES FHNTVTITIQ DINHDEENPP TAGSSKRLIE ASAWRFSRSH
201: STGHFMVKTT DANVKSKRRH YQTGSCVSFD ELTRYEGAGW QWLGDSSHIS RIEV

Arabidopsis Description

ATL28RING-H2 finger protein ATL28 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKR1]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.