Factsheet for HORVU1Hr1G001970.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G086510.1	Barley	mitochondrion	78.89	80.68
HORVU3Hr1G007990.1	Barley	cytosol	53.33	53.93
HORVU6Hr1G051510.1	Barley	nucleus	40.0	41.38
HORVU7Hr1G096980.1	Barley	extracellular, vacuole	74.44	32.37
HORVU4Hr1G004070.1	Barley	cytosol	75.56	27.98
GSMUA_Achr8P09280_001	Banana	cytosol	12.22	22.92
Os04t0450300-00	Rice	endoplasmic reticulum, golgi	67.78	17.99
KXG26428	Sorghum	plasma membrane	64.44	14.29
HORVU7Hr1G121570.1	Barley	endoplasmic reticulum	40.0	14.23
Zm00001d003499_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	60.0	13.92
HORVU4Hr1G080840.1	Barley	cytosol	30.0	11.39
HORVU4Hr1G022090.1	Barley	endoplasmic reticulum, golgi, plasma membrane	25.56	10.85
HORVU3Hr1G098880.1	Barley	plasma membrane	37.78	9.91
HORVU5Hr1G106000.1	Barley	golgi	34.44	9.04
HORVU5Hr1G069980.1	Barley	plasma membrane	37.78	8.85
HORVU6Hr1G077610.1	Barley	plasma membrane	37.78	8.37
KRH13267	Soybean	plasma membrane	14.44	7.98
HORVU6Hr1G022590.1	Barley	golgi, mitochondrion	33.33	7.43
HORVU4Hr1G078260.1	Barley	plasma membrane	27.78	7.0
HORVU7Hr1G036380.2	Barley	endoplasmic reticulum	32.22	6.97
KRH38505	Soybean	plasma membrane, vacuole	20.0	6.32
HORVU7Hr1G098470.1	Barley	plastid	25.56	5.75
HORVU1Hr1G095220.1	Barley	golgi, plasma membrane	24.44	5.58
HORVU4Hr1G057610.1	Barley	plastid	25.56	5.58

Protein Annotations

EnsemblPlants:HORVU1Hr1G001970.1	EnsemblPlantsGene:HORVU1Hr1G001970	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF460	PFAM:PF13639	PFscan:PS50089	SEG:seg
SUPFAM:SSF57850	UniParc:UPI000B486B9C	UniProt:A0A287EFZ4	MapMan:35.2	:	:

Description

No Description!

Coordinates

chrchr1H:+:4192314..4192584

Molecular Weight (calculated)

10067.1 Da

IEP (calculated)

7.428

GRAVY (calculated)

-0.570

Length

90 amino acids

Sequence
(BLAST)

1: CCTSPQKKTM LHLFRRLLPH CSHAFHPECI DPWLEPWITC PLCRANLEKP PPPPPPAVAP PSPEQVARRQ PSPSSSPPHA VAIPVREEEE

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.