Factsheet for PGSC0003DMT400056935

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000833
PGSC0003DMT400001221
PGSC0003DMT400006495
PGSC0003DMT400015077
PGSC0003DMT400020320
PGSC0003DMT400039734
PGSC0003DMT400047264
PGSC0003DMT400047670
PGSC0003DMT400050482
PGSC0003DMT400051986
PGSC0003DMT400052662
PGSC0003DMT400064369

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27390.1	PGSC0003DMT400051986	AT3G20000.1	17981999
AT3G27080.1	PGSC0003DMT400039734	AT1G03630.1	21798944
AT3G27080.1	PGSC0003DMT400047264	AT1G03630.1	21798944
AT3G27080.1	PGSC0003DMT400064369	AT1G03630.1	21798944
AT3G27080.1	PGSC0003DMT400000833	AT2G20130.1	21798944
AT3G27080.1	PGSC0003DMT400020320	AT2G31040.1	21798944
AT3G27080.1	PGSC0003DMT400052662	AT2G31040.1	21798944
AT3G27080.1	PGSC0003DMT400006495	AT3G16310.1	21798944
AT3G27080.1	PGSC0003DMT400051986	AT3G20000.1	17981999
AT3G27080.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT3G27080.1	PGSC0003DMT400050482	AT5G22290.1	21798944
AT5G40930.1	PGSC0003DMT400001221	AT2G27940.1	21798944
AT5G40930.1	PGSC0003DMT400047670	AT2G46550.1	21798944
AT5G40930.1	PGSC0003DMT400051986	AT3G20000.1	17981999
AT5G40930.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT5G40930.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056939	Potato	cytosol	68.75	78.11
Solyc02g068130.2.1	Tomato	plastid	68.75	64.71
VIT_14s0068g02030.t01	Wine grape	cytosol	59.9	57.21
PGSC0003DMT400052223	Potato	cytosol	58.33	54.63
KRH57705	Soybean	nucleus	58.33	53.33
KRG94268	Soybean	nucleus	56.25	51.67
KRH31475	Soybean	mitochondrion	52.08	49.75
KRG97423	Soybean	cytosol	53.12	47.0
Os01t0921600-01	Rice	mitochondrion, plastid	46.88	44.55
AT5G40930.1	Thale cress	cytosol	43.23	44.38
EES01977	Sorghum	cytosol	46.88	44.34
Bra032826.1-P	Field mustard	cytosol	47.92	43.4
CDY27615	Canola	cytosol	47.92	43.4
Zm00001d042329_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	45.83	43.35
Zm00001d012017_P002	Maize	mitochondrion	45.31	43.07
CDX84923	Canola	cytosol	46.35	42.79
Bra032980.1-P	Field mustard	cytosol	43.75	42.21
CDY34181	Canola	cytosol	43.75	42.21
GSMUA_Achr8P00730_001	Banana	plasma membrane, vacuole	16.67	42.11
AT3G27080.1	Thale cress	cytosol	44.27	42.08
TraesCS3D01G425100.1	Wheat	cytosol	44.79	41.15
TraesCS3B01G467700.1	Wheat	golgi	44.27	40.67
CDY28496	Canola	cytosol	42.71	40.59
AT1G27390.1	Thale cress	cytosol	44.27	40.48
TraesCS3A01G429800.1	Wheat	cytosol	44.27	40.48
CDY03918	Canola	cytosol	43.75	40.38
CDY11814	Canola	cytosol	43.23	39.9
CDY15710	Canola	cytosol	43.75	39.62
Bra010946.1-P	Field mustard	cytosol	42.71	39.23
Bra030044.1-P	Field mustard	cytosol	43.75	39.07
CDX90082	Canola	cytosol	41.67	38.46
Zm00001d040209_P001	Maize	cytosol	26.56	31.29
AT3G27070.2	Thale cress	plasma membrane	36.46	28.23
CDY35747	Canola	cytosol	18.75	28.12
HORVU3Hr1G094550.2	Barley	plastid	23.44	20.09
HORVU7Hr1G075380.6	Barley	cytosol, plastid	12.5	14.63

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102589314	MapMan:23.2.1.5	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005742
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0045040	InterPro:IPR011990	UniProt:M1C037	PFAM:PD102047	PFAM:PF06552	EnsemblPlantsGene:PGSC0003DMG401022140
PGSC:PGSC0003DMG401022140	EnsemblPlants:PGSC0003DMT400056935	PANTHER:PTHR32409	SUPFAM:SSF48452	TMHMM:TMhelix	InterPro:TOM20_imprt_rcpt
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00029494C2	RefSeq:XP_006346064.1	SEG:seg	:	:

Description

Mitochondrial import receptor subunit TOM20 [Source:PGSC_GENE;Acc:PGSC0003DMG401022140]

Coordinates

chr7:-:56247643..56252976

Molecular Weight (calculated)

21377.5 Da

IEP (calculated)

8.224

GRAVY (calculated)

-0.473

Length

192 amino acids

Sequence
(BLAST)

001: MEMRLSLERD RKSAETSYAQ NPLDGDKLAR WGRALLNLAQ FEHGAKSKQM ISDATSKLEK ALTLNPKTKH DVLWCLGNAY TSYGLLVTDM DAAALYFEKA
101: TMCFKQASDA DPSNDLYRKS LDVAAKAQEL HMEMHRHGPI QQTMAAEPST STSTKSSKKK SSDLNYDIFG WVILAAGIVA WLIIDSKPPH PQ

Best Arabidopsis Sequence Match ( AT1G27390.1 )
(BLAST)

001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR

Arabidopsis Description

TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.