Factsheet for PGSC0003DMT400052662

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009054
PGSC0003DMT400047670
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31040.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT2G31040.1	PGSC0003DMT400047670	AT2G46550.1	21798944
AT2G31040.1	PGSC0003DMT400009054	AT3G50910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g055050.2.1	Tomato	plastid	96.45	96.45
PGSC0003DMT400020320	Potato	plastid	70.12	69.91
VIT_12s0028g02170.t01	Wine grape	plastid	64.79	64.79
CDX97768	Canola	plastid	61.24	61.24
CDY58985	Canola	plastid	60.95	60.95
Bra021688.1-P	Field mustard	plastid	60.65	60.65
AT2G31040.1	Thale cress	plastid	60.35	58.29
KRH55746	Soybean	plastid	57.4	57.91
GSMUA_Achr8P27290_001	Banana	plastid	57.4	55.91
Os01t0673800-01	Rice	mitochondrion	54.44	50.55
Zm00001d011569_P001	Maize	plastid	53.85	49.86
KXG33095	Sorghum	mitochondrion, plastid	53.55	49.18
TraesCS3A01G271600.2	Wheat	mitochondrion	52.66	49.17
TraesCS3D01G271200.1	Wheat	mitochondrion	52.66	49.17
CDX84806	Canola	extracellular, plasma membrane, plastid	16.86	48.72
TraesCS3B01G305300.1	Wheat	mitochondrion	52.07	48.62
HORVU1Hr1G066500.1	Barley	plastid	13.91	26.86

Protein Annotations

EnsemblPlants:PGSC0003DMT400052662	EnsemblPlantsGene:PGSC0003DMG400020443	EntrezGene:102599919	PANTHER:PTHR34118	PANTHER:PTHR34118:SF3	PGSC:PGSC0003DMG400020443
RefSeq:XP_015164871.1	SEG:seg	UniParc:UPI00029547CB	UniProt:M1BTT0	MapMan:1.1.9.3.1	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400020443]

Coordinates

chr7:+:50144615..50149480

Molecular Weight (calculated)

37006.7 Da

IEP (calculated)

8.325

GRAVY (calculated)

-0.165

Length

338 amino acids

Sequence
(BLAST)

001: MGVLNYCYLS VTSTATPISQ DSSNNPTPLS IPTQSKQKPV KLSSGVAATG DYAADPPTTT TKLRKYWGED VDPLTSDDFI WNTEFMGRMK KYIQDPQENA
101: PAAAVKEEIS GFLSLNRVMN LDSLEVDLTK ELTAPSQPVL EPEVENTQAP FTASQKWRPA PTRREQEKWG KAAKAATGGS DVMFREIKRP QGDPKVMAAQ
201: SREQYLKLKN KLQLLTVGIG GVGVISAYIS YSPEIAISYT AGLIGSLMYM RMLGNSVDSM LSDGPRALIK GAVGQPRLLV PVALVMIFNR WNGILVPEYG
301: FMHLELIPML VGFFTYKIAT FVQAIEEGVS IIGNKSQA

Best Arabidopsis Sequence Match ( AT2G31040.1 )
(BLAST)

001: MAILSYISAT STTPPIPQDQ SPNSRLPTKI ILPNKKPEKW STGVAPGEYG GPPTTTKLRK YWGGEKEDPI TSTDLIWNRD FMDQMKKLFD DPNDSSLDPS
101: PSKEKSSGFL SFSRVMSLDS MDVDLSKELA SSSKSVVKNR LDTSKSEAKK QMSKAIVSPK WKLAPTRREQ EKWDRATKAA TGGSDVMFRE LRRPRGDPEV
201: QAAKDREQYF KLKNKIQVLT LGIGGVGLVS AYISYTPEIA LSFGAGLLGS LAYMRMLGNS VDAMADGARG VAKGAANQPR LLVPVVLVMI FNRWNAILVP
301: EYGFMHLELI PMLVGFFTYK IATFFQAIEE AISITTQKPE SISPDTQASD

Arabidopsis Description

CGL160Protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82279]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.