Factsheet for Solyc07g055050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g085000.2.1
Solyc03g083000.2.1
Solyc05g015640.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31040.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT2G31040.1	Solyc03g083000.2.1	AT2G46550.1	21798944
AT2G31040.1	Solyc02g085000.2.1	AT3G50910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052662	Potato	plastid	96.45	96.45
Solyc12g010870.1.1	Tomato	plastid	70.41	69.59
VIT_12s0028g02170.t01	Wine grape	plastid	64.5	64.5
CDY58985	Canola	plastid	61.54	61.54
Bra021688.1-P	Field mustard	plastid	61.24	61.24
CDX97768	Canola	plastid	61.24	61.24
AT2G31040.1	Thale cress	plastid	60.06	58.0
KRH55746	Soybean	plastid	57.4	57.91
GSMUA_Achr8P27290_001	Banana	plastid	57.4	55.91
Os01t0673800-01	Rice	mitochondrion	54.44	50.55
Zm00001d011569_P001	Maize	plastid	54.44	50.41
KXG33095	Sorghum	mitochondrion, plastid	53.85	49.46
TraesCS3A01G271600.2	Wheat	mitochondrion	52.96	49.45
TraesCS3D01G271200.1	Wheat	mitochondrion	52.96	49.45
TraesCS3B01G305300.1	Wheat	mitochondrion	52.37	48.9
CDX84806	Canola	extracellular, plasma membrane, plastid	16.86	48.72
HORVU1Hr1G066500.1	Barley	plastid	14.2	27.43

Protein Annotations

EnsemblPlants:Solyc07g055050.2.1	EnsemblPlantsGene:Solyc07g055050.2	PANTHER:PTHR34118	PANTHER:PTHR34118:SF3	SEG:seg	UniParc:UPI000276C816
UniProt:K4CG45	MapMan:1.1.9.3.1	:	:	:	:

Description

No Description!

Coordinates

chr7:+:63182200..63186759

Molecular Weight (calculated)

37020.7 Da

IEP (calculated)

8.776

GRAVY (calculated)

-0.204

Length

338 amino acids

Sequence
(BLAST)

001: MGVLSYCYLP ITSTATPISQ DSSNNPTPLS IPTQSKQKSV KLSSGVAANG DYAADPPTTT TKLRKYWGED VDPLTSDDFI WNKEFMGRMK KYIQDPQENA
101: PAAAVKEEIS GFLSLNRVMN LDSLEVDLTK ELTAPSQPVL EPEVENTQAG FTASQKWRPA PTRREQEKWG KAAKAATGGS DVMLREIKRP QGDPKVMAAQ
201: SREQYLKLKN KLQLLTVGIG GVGVISAYIS YSPEITVSYT AGLIGSLMYM RMLGNSVDSM QSDGPRALIK GAVGQPRLLV PVTLVMIFNR WNGILVPEYG
301: FMHLELIPML VGFFTYKIAT FVQAIEEGVS IIGNKSQA

Best Arabidopsis Sequence Match ( AT2G31040.1 )
(BLAST)

001: MAILSYISAT STTPPIPQDQ SPNSRLPTKI ILPNKKPEKW STGVAPGEYG GPPTTTKLRK YWGGEKEDPI TSTDLIWNRD FMDQMKKLFD DPNDSSLDPS
101: PSKEKSSGFL SFSRVMSLDS MDVDLSKELA SSSKSVVKNR LDTSKSEAKK QMSKAIVSPK WKLAPTRREQ EKWDRATKAA TGGSDVMFRE LRRPRGDPEV
201: QAAKDREQYF KLKNKIQVLT LGIGGVGLVS AYISYTPEIA LSFGAGLLGS LAYMRMLGNS VDAMADGARG VAKGAANQPR LLVPVVLVMI FNRWNAILVP
301: EYGFMHLELI PMLVGFFTYK IATFFQAIEE AISITTQKPE SISPDTQASD

Arabidopsis Description

CGL160Protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82279]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.