Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97768 | Canola | plastid | 59.83 | 20.71 |
| CDY58985 | Canola | plastid | 59.83 | 20.71 |
| AT2G31040.1 | Thale cress | plastid | 57.27 | 19.14 |
| KRH55746 | Soybean | plastid | 48.72 | 17.01 |
| Solyc07g055050.2.1 | Tomato | plastid | 48.72 | 16.86 |
| PGSC0003DMT400052662 | Potato | plastid | 48.72 | 16.86 |
| VIT_12s0028g02170.t01 | Wine grape | plastid | 47.01 | 16.27 |
| GSMUA_Achr8P27290_001 | Banana | plastid | 47.86 | 16.14 |
| PGSC0003DMT400020320 | Potato | plastid | 46.15 | 15.93 |
| Solyc12g010870.1.1 | Tomato | plastid | 46.15 | 15.79 |
| TraesCS3B01G305300.1 | Wheat | mitochondrion | 41.88 | 13.54 |
| TraesCS3A01G271600.2 | Wheat | mitochondrion | 41.03 | 13.26 |
| TraesCS3D01G271200.1 | Wheat | mitochondrion | 41.03 | 13.26 |
| Os01t0673800-01 | Rice | mitochondrion | 41.03 | 13.19 |
| KXG33095 | Sorghum | mitochondrion, plastid | 41.03 | 13.04 |
| Zm00001d011569_P001 | Maize | plastid | 40.17 | 12.88 |
| CDY23969 | Canola | cytosol, endoplasmic reticulum, extracellular | 22.22 | 11.35 |
| HORVU1Hr1G066500.1 | Barley | plastid | 7.69 | 5.14 |
Protein Annotations
| EnsemblPlants:CDX84806 | EnsemblPlantsGene:GSBRNA2T00142106001 | GO:A0A078D638 | PANTHER:PTHR34118 | PANTHER:PTHR34118:SF3 | ProteinID:CDX84806 |
| ProteinID:CDX84806.1 | TMHMM:TMhelix | UniParc:UPI0004EE952F | MapMan:1.1.9.3.1 | : | : |
Description
BnaA03g14240D
Coordinates
chrLK031838:+:1346981..1347499
Molecular Weight (calculated)
13106.5 Da
IEP (calculated)
9.615
GRAVY (calculated)
0.671
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLAYMRMF GNTVDAMADG AIGVMNYVGA AGQPRLLVLV VLIYFLNMFG RILVPQYEFM HLKLIPMLVG FFTYKVATFF QAIEEDISIS TIKKAMSKST
101: YFSLYNKLVL FCVKSSG
101: YFSLYNKLVL FCVKSSG
001: MAILSYISAT STTPPIPQDQ SPNSRLPTKI ILPNKKPEKW STGVAPGEYG GPPTTTKLRK YWGGEKEDPI TSTDLIWNRD FMDQMKKLFD DPNDSSLDPS
101: PSKEKSSGFL SFSRVMSLDS MDVDLSKELA SSSKSVVKNR LDTSKSEAKK QMSKAIVSPK WKLAPTRREQ EKWDRATKAA TGGSDVMFRE LRRPRGDPEV
201: QAAKDREQYF KLKNKIQVLT LGIGGVGLVS AYISYTPEIA LSFGAGLLGS LAYMRMLGNS VDAMADGARG VAKGAANQPR LLVPVVLVMI FNRWNAILVP
301: EYGFMHLELI PMLVGFFTYK IATFFQAIEE AISITTQKPE SISPDTQASD
101: PSKEKSSGFL SFSRVMSLDS MDVDLSKELA SSSKSVVKNR LDTSKSEAKK QMSKAIVSPK WKLAPTRREQ EKWDRATKAA TGGSDVMFRE LRRPRGDPEV
201: QAAKDREQYF KLKNKIQVLT LGIGGVGLVS AYISYTPEIA LSFGAGLLGS LAYMRMLGNS VDAMADGARG VAKGAANQPR LLVPVVLVMI FNRWNAILVP
301: EYGFMHLELI PMLVGFFTYK IATFFQAIEE AISITTQKPE SISPDTQASD
Arabidopsis Description
CGL160Protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82279]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.