Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 2
- mitochondrion 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58985 | Canola | plastid | 94.38 | 94.38 |
| AT2G31040.1 | Thale cress | plastid | 85.8 | 82.86 |
| VIT_12s0028g02170.t01 | Wine grape | plastid | 65.98 | 65.98 |
| KRH55746 | Soybean | plastid | 62.43 | 62.99 |
| PGSC0003DMT400020320 | Potato | plastid | 61.83 | 61.65 |
| Solyc12g010870.1.1 | Tomato | plastid | 62.13 | 61.4 |
| Solyc07g055050.2.1 | Tomato | plastid | 61.24 | 61.24 |
| PGSC0003DMT400052662 | Potato | plastid | 61.24 | 61.24 |
| CDX84806 | Canola | extracellular, plasma membrane, plastid | 20.71 | 59.83 |
| GSMUA_Achr8P27290_001 | Banana | plastid | 57.99 | 56.48 |
| Os01t0673800-01 | Rice | mitochondrion | 55.33 | 51.37 |
| TraesCS3A01G271600.2 | Wheat | mitochondrion | 54.73 | 51.1 |
| TraesCS3D01G271200.1 | Wheat | mitochondrion | 54.73 | 51.1 |
| TraesCS3B01G305300.1 | Wheat | mitochondrion | 54.44 | 50.83 |
| Zm00001d011569_P001 | Maize | plastid | 54.73 | 50.68 |
| KXG33095 | Sorghum | mitochondrion, plastid | 54.44 | 50.0 |
| HORVU1Hr1G066500.1 | Barley | plastid | 15.68 | 30.29 |
| CDY23969 | Canola | cytosol, endoplasmic reticulum, extracellular | 13.31 | 19.65 |
Protein Annotations
| EnsemblPlants:CDX97768 | EnsemblPlantsGene:GSBRNA2T00105047001 | GO:A0A078EEG6 | ncoils:Coil | PANTHER:PTHR34118 | PANTHER:PTHR34118:SF3 |
| ProteinID:CDX97768 | ProteinID:CDX97768.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE1C1C | MapMan:1.1.9.3.1 |
Description
BnaC04g41710D
Coordinates
chrLK031901:+:226069..228215
Molecular Weight (calculated)
37548.4 Da
IEP (calculated)
10.034
GRAVY (calculated)
-0.346
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIRTYISAT STTPPIPQDP SRSPLPTKII LPNKKPEKWS TGVAPGEYGG PPTTTKLRKY WGGEKEDPIT SKDLIWNRDF MDQMKKLFDS PDDAPLDPSP
101: SKEESSGFLS FSRVMSLDSM DVDLSKELTS SSSKSVLRDL EASKSEARKQ MSKARVSPKW KLAPTRREQD KWDRATKAAT GGSDVMFREL RRPRGDRQVL
201: AAESREQYFK LKNKLQLLTV GIGGVGLVSA YISYTPEITL SFGAGLMGSL AYMRMLGNTV DAMADGARGV MKGASGQPRL LVPVVLVMIF NRWNAILVPE
301: YGFMHLELIP MLVGFFTYKI ATFFQAIEEA ITISTQKD
101: SKEESSGFLS FSRVMSLDSM DVDLSKELTS SSSKSVLRDL EASKSEARKQ MSKARVSPKW KLAPTRREQD KWDRATKAAT GGSDVMFREL RRPRGDRQVL
201: AAESREQYFK LKNKLQLLTV GIGGVGLVSA YISYTPEITL SFGAGLMGSL AYMRMLGNTV DAMADGARGV MKGASGQPRL LVPVVLVMIF NRWNAILVPE
301: YGFMHLELIP MLVGFFTYKI ATFFQAIEEA ITISTQKD
001: MAILSYISAT STTPPIPQDQ SPNSRLPTKI ILPNKKPEKW STGVAPGEYG GPPTTTKLRK YWGGEKEDPI TSTDLIWNRD FMDQMKKLFD DPNDSSLDPS
101: PSKEKSSGFL SFSRVMSLDS MDVDLSKELA SSSKSVVKNR LDTSKSEAKK QMSKAIVSPK WKLAPTRREQ EKWDRATKAA TGGSDVMFRE LRRPRGDPEV
201: QAAKDREQYF KLKNKIQVLT LGIGGVGLVS AYISYTPEIA LSFGAGLLGS LAYMRMLGNS VDAMADGARG VAKGAANQPR LLVPVVLVMI FNRWNAILVP
301: EYGFMHLELI PMLVGFFTYK IATFFQAIEE AISITTQKPE SISPDTQASD
101: PSKEKSSGFL SFSRVMSLDS MDVDLSKELA SSSKSVVKNR LDTSKSEAKK QMSKAIVSPK WKLAPTRREQ EKWDRATKAA TGGSDVMFRE LRRPRGDPEV
201: QAAKDREQYF KLKNKIQVLT LGIGGVGLVS AYISYTPEIA LSFGAGLLGS LAYMRMLGNS VDAMADGARG VAKGAANQPR LLVPVVLVMI FNRWNAILVP
301: EYGFMHLELI PMLVGFFTYK IATFFQAIEE AISITTQKPE SISPDTQASD
Arabidopsis Description
CGL160Protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82279]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.