CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 5
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05123
EES13800
KXG35486
OQU78405
OQU85551

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31040.1	EES05123	AT1G27300.1	21798944
AT2G31040.1	EES13800	AT2G46550.1	21798944
AT2G31040.1	KXG35486	AT2G46550.1	21798944
AT2G31040.1	OQU78405	AT3G50910.1	21798944
AT2G31040.1	OQU85551	AT3G50910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011569_P001	Maize	plastid	92.93	93.7
Os01t0673800-01	Rice	mitochondrion	83.15	84.07
TraesCS3B01G305300.1	Wheat	mitochondrion	71.47	72.65
TraesCS3D01G271200.1	Wheat	mitochondrion	71.2	72.38
TraesCS3A01G271600.2	Wheat	mitochondrion	70.38	71.55
GSMUA_Achr8P27290_001	Banana	plastid	57.07	60.52
VIT_12s0028g02170.t01	Wine grape	plastid	54.89	59.76
KRH55746	Soybean	plastid	51.9	57.01
PGSC0003DMT400020320	Potato	plastid	51.36	55.75
Solyc12g010870.1.1	Tomato	plastid	51.63	55.56
Bra021688.1-P	Field mustard	plastid	50.27	54.73
CDX97768	Canola	plastid	50.0	54.44
CDY58985	Canola	plastid	49.73	54.14
Solyc07g055050.2.1	Tomato	plastid	49.46	53.85
PGSC0003DMT400052662	Potato	plastid	49.18	53.55
AT2G31040.1	Thale cress	plastid	49.46	52.0
CDX84806	Canola	extracellular, plasma membrane, plastid	13.04	41.03
HORVU1Hr1G066500.1	Barley	plastid	16.85	35.43

Protein Annotations

EnsemblPlants:KXG33095	EnsemblPlantsGene:SORBI_3003G253300	PANTHER:PTHR34118	PANTHER:PTHR34118:SF3	ProteinID:KXG33095	ProteinID:KXG33095.1
ProteinID:KXG33096.1	SEG:seg	UniParc:UPI0001C80B7E	UniProt:A0A1B6Q5D4	MapMan:1.1.9.3.1	:

Description

hypothetical protein

Coordinates

chr3:-:59197068..59201451

Molecular Weight (calculated)

39548.6 Da

IEP (calculated)

9.955

GRAVY (calculated)

-0.121

Length

368 amino acids

Sequence
(BLAST)

001: MSLLAVASST RAAAVRPLCA SAASSGEAVP APATAATTEA AGRRPVKVIL PKKKPQKWST GMAPGEYGGG PATIKPRKYW WGKEDRDPVG NTDDFIWNKD
101: FLPHMERVIA NGGADAEPTI TRLSPVDEEE SGFLSINRAM SLDSVDVDLS QELLAPTRPI LQTQVEAAWK GRAIGAEAVN GANTPRWRLV PTRREQAKWD
201: RAAKAATGGT DVILRESKSR VQQGDPKLLA ARSREDYLKL KQRLQWLTLG IGGVGVISAY ISYSPEVAAS FGAGLIGSLV YLRMLGTSVD SLAGGTGETV
301: KSAAAQPRLL IPVVLVMMYN RWNGILVPDY GFMQLQLIPM LVGFFTYKIA TFAQAIQDSI PAVGNREG

Best Arabidopsis Sequence Match ( AT2G31040.1 )
(BLAST)

001: MAILSYISAT STTPPIPQDQ SPNSRLPTKI ILPNKKPEKW STGVAPGEYG GPPTTTKLRK YWGGEKEDPI TSTDLIWNRD FMDQMKKLFD DPNDSSLDPS
101: PSKEKSSGFL SFSRVMSLDS MDVDLSKELA SSSKSVVKNR LDTSKSEAKK QMSKAIVSPK WKLAPTRREQ EKWDRATKAA TGGSDVMFRE LRRPRGDPEV
201: QAAKDREQYF KLKNKIQVLT LGIGGVGLVS AYISYTPEIA LSFGAGLLGS LAYMRMLGNS VDAMADGARG VAKGAANQPR LLVPVVLVMI FNRWNAILVP
301: EYGFMHLELI PMLVGFFTYK IATFFQAIEE AISITTQKPE SISPDTQASD

Arabidopsis Description

CGL160Protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82279]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.