Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038964_P001 | Maize | nucleus | 81.92 | 82.12 |
| OQU85551 | Sorghum | cytosol, plastid | 80.52 | 75.72 |
| Os02t0704600-01 | Rice | nucleus | 73.24 | 68.42 |
| TraesCS6A01G272000.1 | Wheat | nucleus | 66.43 | 62.61 |
| TraesCS6D01G252200.1 | Wheat | nucleus | 65.73 | 62.36 |
| HORVU6Hr1G068770.1 | Barley | nucleus | 66.2 | 62.11 |
| TraesCS6B01G299600.1 | Wheat | nucleus | 66.2 | 61.57 |
| GSMUA_Achr2P22980_001 | Banana | cytosol, nucleus, peroxisome, plastid | 44.84 | 45.91 |
| GSMUA_Achr6P08980_001 | Banana | nucleus | 42.25 | 43.9 |
| GSMUA_Achr1P12060_001 | Banana | plastid | 39.67 | 42.89 |
| Bra037167.1-P | Field mustard | mitochondrion | 20.89 | 42.18 |
| Bra036850.1-P | Field mustard | plastid | 36.62 | 37.59 |
| CDX73773 | Canola | cytosol | 36.15 | 37.38 |
| CDX77962 | Canola | nucleus, plastid | 35.92 | 36.87 |
| CDX90677 | Canola | nucleus | 34.51 | 36.03 |
| Bra012880.1-P | Field mustard | nucleus | 34.04 | 35.54 |
| KRH08190 | Soybean | nucleus | 36.15 | 35.32 |
| CDY28989 | Canola | nucleus | 34.27 | 34.84 |
| AT3G50910.1 | Thale cress | cytosol | 35.68 | 34.0 |
| CDY18608 | Canola | nucleus | 28.17 | 33.06 |
| KRH76747 | Soybean | plastid | 33.57 | 32.8 |
| KRH28715 | Soybean | cytosol | 30.52 | 31.71 |
| VIT_04s0023g02110.t01 | Wine grape | endoplasmic reticulum | 36.15 | 30.92 |
| AT5G66480.1 | Thale cress | plastid | 31.69 | 30.41 |
| Solyc02g085000.2.1 | Tomato | nucleus | 32.86 | 30.3 |
| PGSC0003DMT400009054 | Potato | nucleus, plastid | 32.86 | 29.11 |
| CDY67893 | Canola | nucleus | 21.36 | 26.38 |
| KRH69884 | Soybean | nucleus | 33.57 | 19.75 |
Protein Annotations
| EnsemblPlants:OQU78405 | EnsemblPlantsGene:SORBI_3009G227100 | EntrezGene:8063574 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR35490 | ProteinID:EES19923.1 | ProteinID:OQU78405 | ProteinID:OQU78405.1 | RefSeq:XP_002441493.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0001A89254 | UniProt:C5YVF1 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr9:-:56849424..56853773
Molecular Weight (calculated)
46711.5 Da
IEP (calculated)
4.638
GRAVY (calculated)
-0.629
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSMTHYVLD RFLETGSPAQ VQKAVPKPPP PPPDKTTPVP VCPVRAQTSP ASLYATPEIT ALPDSPSSFP GTWSPYLINH KRRGASLART FSQGDAGREG
101: SQPKLPVMLP ALPKGGEPTE VQETQFVFQQ EGNGQAEGDS GVEEALDDNS GMLQKGKGSV VAESEHEQPE FEFQRRSLEA LVKPVNVGRP LNGGAHRDSE
201: GDIFEWWKPS SPLGTSVGTP GAEFYDAFEE MSSDGGTRSS RGMDDDLREM RLSLLMEIER RTQAEEALEI WQQEWKNLSH HLSLIDFSLP SPSIAEDSDG
301: SSLDPGAELC QQIMISTLVA SATARGFARA EVESDMETMI AAKNFEIARL SDRVQYYEAA NREMSQRNQE AIEMSRQQRK ERKKRQKWFW GSVGLAVTLG
401: ATAIAWTYLP SSQPQASADP NSAASN
101: SQPKLPVMLP ALPKGGEPTE VQETQFVFQQ EGNGQAEGDS GVEEALDDNS GMLQKGKGSV VAESEHEQPE FEFQRRSLEA LVKPVNVGRP LNGGAHRDSE
201: GDIFEWWKPS SPLGTSVGTP GAEFYDAFEE MSSDGGTRSS RGMDDDLREM RLSLLMEIER RTQAEEALEI WQQEWKNLSH HLSLIDFSLP SPSIAEDSDG
301: SSLDPGAELC QQIMISTLVA SATARGFARA EVESDMETMI AAKNFEIARL SDRVQYYEAA NREMSQRNQE AIEMSRQQRK ERKKRQKWFW GSVGLAVTLG
401: ATAIAWTYLP SSQPQASADP NSAASN
001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
Arabidopsis Description
AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.