CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70131
CDX73772
CDX77077
CDX77963
CDX80972
CDX81329
CDX90676
CDY01429
CDY11339
CDY12819
CDY14956
CDY28990
CDY28991
CDY34432
CDY37508
CDY52388

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66480.1	CDX77077	AT3G01660.1	21798944
AT5G66480.1	CDY37508	AT3G01660.1	21798944
AT5G66480.1	CDX73772	AT3G50920.1	21798944
AT5G66480.1	CDX77963	AT3G50920.1	21798944
AT5G66480.1	CDX90676	AT3G50920.1	21798944
AT5G66480.1	CDY28990	AT3G50920.1	21798944
AT5G66480.1	CDY28991	AT3G50920.1	21798944
AT5G66480.1	CDY34432	AT3G50920.1	21798944
AT5G66480.1	CDY52388	AT3G50920.1	21798944
AT5G66480.1	CDX70131	AT5G05760.1	21798944
AT5G66480.1	CDX80972	AT5G05760.1	21798944
AT5G66480.1	CDY11339	AT5G05760.1	21798944
AT5G66480.1	CDY14956	AT5G05760.1	21798944
AT5G66480.1	CDX81329	AT5G67210.1	21798944
AT5G66480.1	CDY01429	AT5G67210.1	21798944
AT5G66480.1	CDY12819	AT5G67210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037167.1-P	Field mustard	mitochondrion	44.9	77.25
AT5G66480.1	Thale cress	plastid	57.58	47.07
CDX73773	Canola	cytosol	51.79	45.63
Zm00001d020667_P001	Maize	nucleus	16.53	45.11
CDX90677	Canola	nucleus	50.41	44.85
CDX77962	Canola	nucleus, plastid	51.24	44.82
CDY28989	Canola	nucleus	49.04	42.48
CDY67893	Canola	nucleus	33.33	35.07
KRH08190	Soybean	nucleus	39.39	32.8
GSMUA_Achr6P08980_001	Banana	nucleus	36.91	32.68
GSMUA_Achr2P22980_001	Banana	cytosol, nucleus, peroxisome, plastid	36.09	31.49
KRH76747	Soybean	plastid	36.64	30.5
VIT_04s0023g02110.t01	Wine grape	endoplasmic reticulum	41.32	30.12
KRH28715	Soybean	cytosol	33.88	30.0
GSMUA_Achr1P12060_001	Banana	plastid	31.41	28.93
OQU85551	Sorghum	cytosol, plastid	36.09	28.92
Solyc02g085000.2.1	Tomato	nucleus	36.64	28.79
TraesCS6A01G272000.1	Wheat	nucleus	35.81	28.76
Os02t0704600-01	Rice	nucleus	36.09	28.73
HORVU6Hr1G068770.1	Barley	nucleus	35.81	28.63
TraesCS6D01G252200.1	Wheat	nucleus	35.26	28.51
OQU78405	Sorghum	nucleus	33.06	28.17
TraesCS6B01G299600.1	Wheat	nucleus	34.99	27.73
Zm00001d017768_P006	Maize	cytosol	36.09	27.58
Zm00001d051562_P001	Maize	plastid	33.33	27.44
Zm00001d038964_P001	Maize	nucleus	31.68	27.06
PGSC0003DMT400009054	Potato	nucleus, plastid	35.54	26.82
KRH69884	Soybean	nucleus	38.57	19.34

Protein Annotations

EnsemblPlants:CDY18608	EnsemblPlantsGene:GSBRNA2T00005663001	GO:A0A078G1W5	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR35490	ProteinID:CDY18608	ProteinID:CDY18608.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EDB701	UniProt:A0A078G1W5	MapMan:35.2	:	:	:

Description

BnaA09g07870DBnaA09g07870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1W5]

Coordinates

chrLK032087:-:162055..163836

Molecular Weight (calculated)

40669.3 Da

IEP (calculated)

5.695

GRAVY (calculated)

-0.735

Length

363 amino acids

Sequence
(BLAST)

001: MPTFSAAVFD TTLKDHQQTK AKTFSSLYAT PKEIPLPYSP YSSPPSPYIL NHKARRPAPL LKGSSDDVEA TTTSSTSSED DVLGRPVWDS TPPQGNFWGK
101: KSASHISNGD IGSADADNCL AQESYLLESV RTKANKDHVP EYFYDRGQSV SFTSNSGAEN SHNLSSSGGE FYDARDELST DSGTPSSVNN MEAELRLSLL
201: MESEKRRQAE ETLEEMQVHW RRLRQQLAHV GLFLPLDPTS TQYSMNIADE LRCQIEFTRF VSDSLDIELA KAEVEMEMTS ELEAKKFEIT QLSNRLHYSE
301: TVNQEMSQRN QEAIEDARRE KKKKRKRRQR WICGSIAVSI TLGGAVLAYP TANSLKPQPS PIK

Best Arabidopsis Sequence Match ( AT5G66480.1 )
(BLAST)

001: MPTFSAAALG RSLNSGTSLS SKFPSTLQSK PSILNDESKQ PKEKTFTRPQ MSPSLYATTK EIPHPNSPSS YPPSPYIINH KARGPVLFNR DSEVDGPSHP
101: ITSGEEKISG NVDVEATASL SKSTSLSFPI TEAIAVDHTN GVHTQGIHER PVWDCSPPLG TFLNEKSGRD ISNGGIGSNN ATSNLEWQSY LLEPVRIKAD
201: KELEPENFYN PGELVSFTSN TEVEDFERAE SSHSLATHVG EFYDACDELS TDSGMQSSAN NIESEVREMR LGLLMEIERR RQAEATLEQM QVHWRRLRDQ
301: LADVGMFLPL DPTRSQYSMN LADELRCQLE VTRFVSDTLG SDLAKTEVEM EMEAELEAKN FEITRLSDRL HYYETVNQEM SQRNQEAIEV ARRDGQKRKR
401: RQRWIWGSIA ATITLGSGVL AWSYLPPGML SSDEAQPQLS PKDS

Arabidopsis Description

Bacteriophage N4 adsorption B protein [Source:UniProtKB/TrEMBL;Acc:Q93ZY1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.