CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

plastid 1
golgi 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	golgi, peroxisome, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX70995
CDX71796
CDX78905
CDX88803
CDX89063
CDX92368
CDX98596
CDX99411
CDY01565
CDY09128
CDY35676
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50920.1	CDX67837	AT3G60600.1	21798944
AT3G50920.1	CDX71796	AT3G60600.1	21798944
AT3G50920.1	CDX89063	AT3G60600.1	21798944
AT3G50920.1	CDY41153	AT3G60600.1	21798944
AT3G50920.1	CDY48365	AT3G60600.1	21798944
AT3G50920.1	CDX78905	AT4G19030.1	21798944
AT3G50920.1	CDX98596	AT4G19030.1	21798944
AT3G50920.1	CDX99411	AT4G19030.1	21798944
AT3G50920.1	CDY01565	AT4G19030.1	21798944
AT3G50920.1	CDX70995	AT5G22290.1	21798944
AT3G50920.1	CDX88803	AT5G22290.1	21798944
AT3G50920.1	CDX92368	AT5G22290.1	21798944
AT3G50920.1	CDY09128	AT5G22290.1	21798944
AT3G50920.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012879.1-P	Field mustard	golgi, peroxisome, plasma membrane	96.95	96.95
CDY28991	Canola	cytosol, endoplasmic reticulum, peroxisome	35.51	72.77
CDY28990	Canola	plasma membrane	31.37	65.75
CDX73772	Canola	mitochondrion, plastid	32.9	60.16
AT3G50920.1	Thale cress	plastid	33.33	54.84
CDY34432	Canola	cytosol, plasma membrane, plastid	16.34	52.45
CDY45229	Canola	plastid	28.54	49.25
CDY50985	Canola	plastid	29.63	48.57
CDY52388	Canola	cytosol, endoplasmic reticulum, golgi	14.81	47.55
CDY65309	Canola	plastid	27.45	45.0
CDX77963	Canola	cytosol, golgi, peroxisome	22.0	43.16
Solyc02g062570.2.1	Tomato	golgi, plasma membrane, vacuole	18.3	38.89
VIT_04s0023g02150.t01	Wine grape	plasma membrane	18.52	37.95
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	17.86	36.12
Solyc02g062580.2.1	Tomato	plasma membrane	20.04	34.72
KRH76744	Soybean	plastid	21.57	34.62
KRH28718	Soybean	plastid	21.79	34.6
PGSC0003DMT400040097	Potato	plastid	19.83	34.34
HORVU6Hr1G068790.1	Barley	mitochondrion	18.74	31.73
PGSC0003DMT400009288	Potato	extracellular, plasma membrane, vacuole	9.15	31.34
Os02t0704500-01	Rice	plastid	18.3	30.55
Solyc02g084970.2.1	Tomato	plasma membrane, plastid	18.08	30.18
TraesCS6A01G271900.1	Wheat	mitochondrion	17.86	30.15
TraesCS6D01G252100.1	Wheat	plastid	17.86	30.04
OQU85552	Sorghum	plastid	17.86	29.93
TraesCS6A01G271800.1	Wheat	plastid	17.65	29.67
TraesCS6B01G299400.1	Wheat	plastid	17.21	29.59
TraesCS6B01G299500.1	Wheat	plastid	17.43	29.41
Zm00001d017767_P001	Maize	plastid	16.78	27.6
PGSC0003DMT400009294	Potato	cytosol, peroxisome, plasma membrane, plastid	18.3	27.18
Zm00001d051561_P001	Maize	plastid	16.12	23.57

Protein Annotations

EnsemblPlants:CDX90676	EnsemblPlantsGene:GSBRNA2T00151333001	Gene3D:1.20.144.10	GO:A0A078DN24	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase
PANTHER:PTHR11247	PANTHER:PTHR11247:SF25	ProteinID:CDX90676	ProteinID:CDX90676.1	SEG:seg	SMART:SM00014
SUPFAM:SSF48317	TMHMM:TMhelix	UniParc:UPI0004EDDC2D	MapMan:5.2.2.4	:	:

Description

BnaA03g41050D

Coordinates

chrLK031863:+:1448386..1452415

Molecular Weight (calculated)

50572.2 Da

IEP (calculated)

10.025

GRAVY (calculated)

0.602

Length

459 amino acids

Sequence
(BLAST)

001: MAVLVKKFAR RDGSEQSGPV EQEASINGSP ELRYEMVTGR GIEAIVNSLS KWVVSILFAS IILLRHDGTA LWGIIGSVSN SALSLVLKRM LNQARPATTS
101: RTDPGMPSTH AQSISFISVF AVLSVLEWLG TSKVSMFLCC LILASCSYFI RLRVSQKLHT SSQVVVGAIV GSVFCIFWYT TWNSLLLEAF ESSLLLQTSV
201: FLVAAALTLA FATHVVLNCV FSPPQFKLFA CVRFMAVLVK RFARRDGREQ QFVLVEQKAS IKGSPELRYE MVAGRGIEAI VNRLSKWVVF ILFASIILLR
301: HDGTALWGII GSVSNATLCV VLKRILNQAR PATTSRTDPG MPSSHAQSIS YISLFAVLSV MEWFGTSKVS LFLSCLIIAT GSYFIWLRVS QKLHTSSQVV
401: VGAIVGSGFC IFWYTTWNSL LLEAFESSIL LQTSVFLVAA ALTLAFAIFV VLNWFRNDR

Best Arabidopsis Sequence Match ( AT3G50920.2 )
(BLAST)

001: MTVKRFSSRV GSRSNDGNEQ FGALEQESFI NNSSEIRKDL VTGGGIEAIV NRLSKWVVSV LFGSIILLRH DGAALWAVIG SISNSALSVV LKRILNQERP
101: TTTLRSDPGM PSSHAQSISF ISVFAVLSVM EWLGTNGVSL FLSGLILALG SYFIRLRVSQ KLHTSSQVVV GAIVGSLFCI LWYTMWNSLL REAFEASLLV
201: QISVFLFAAT FALAFAAYVV LNWFKDER

Arabidopsis Description

LPPE1Lipid phosphate phosphatase epsilon 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4J220]
SUBAcon: [mitochondrion,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.