Factsheet for PGSC0003DMT400009294

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, peroxisome, plastid

Predictor Summary:

plastid 3
cytosol 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400032086
PGSC0003DMT400050482
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50920.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT3G50920.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT3G50920.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT3G50920.1	PGSC0003DMT400050482	AT5G22290.1	21798944
AT3G50920.1	PGSC0003DMT400032086	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g084970.2.1	Tomato	plasma membrane, plastid	59.87	67.27
PGSC0003DMT400009288	Potato	extracellular, plasma membrane, vacuole	28.16	64.93
PGSC0003DMT400040097	Potato	plastid	46.93	54.72
VIT_04s0023g02150.t01	Wine grape	plasma membrane	35.92	49.55
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	30.74	41.85
Bra005332.1-P	Field mustard	extracellular	10.36	41.03
Bra028216.1-P	Field mustard	extracellular	10.36	40.51
Bra012072.1-P	Field mustard	cytosol, peroxisome, plasma membrane	28.8	40.27
KRH76744	Soybean	plastid	36.89	39.86
Bra031812.1-P	Field mustard	cytosol, peroxisome, plasma membrane	28.16	39.19
Bra037170.1-P	Field mustard	cytosol, peroxisome, plasma membrane	27.51	38.99
KRH28718	Soybean	plastid	36.25	38.75
Bra006653.1-P	Field mustard	extracellular, plasma membrane	11.97	37.76
TraesCS6B01G299500.1	Wheat	plastid	32.69	37.13
TraesCS6A01G271800.1	Wheat	plastid	32.69	37.0
HORVU6Hr1G068790.1	Barley	mitochondrion	32.04	36.53
TraesCS6A01G271900.1	Wheat	mitochondrion	31.72	36.03
TraesCS6B01G299400.1	Wheat	plastid	30.74	35.58
TraesCS6D01G252100.1	Wheat	plastid	31.39	35.53
OQU85552	Sorghum	plastid	31.07	35.04
CDY45229	Canola	plastid	30.1	34.96
CDY50985	Canola	plastid	31.39	34.64
CDY28991	Canola	cytosol, endoplasmic reticulum, peroxisome	24.27	33.48
CDY28990	Canola	plasma membrane	23.62	33.33
Os02t0704500-01	Rice	plastid	29.45	33.09
Zm00001d017767_P001	Maize	plastid	29.45	32.62
CDY65309	Canola	plastid	29.13	32.14
AT3G50920.1	Thale cress	plastid	28.8	31.9
CDX73772	Canola	mitochondrion, plastid	24.6	30.28
Zm00001d051561_P001	Maize	plastid	28.8	28.34
CDY34432	Canola	cytosol, plasma membrane, plastid	12.95	27.97
CDY52388	Canola	cytosol, endoplasmic reticulum, golgi	12.62	27.27
AT5G66450.3	Thale cress	plastid	27.18	27.27
CDX77963	Canola	cytosol, golgi, peroxisome	17.8	23.5
Bra036849.1-P	Field mustard	cytosol, golgi, peroxisome	17.8	23.5
CDX90676	Canola	golgi, peroxisome, plasma membrane	27.18	18.3
Bra012879.1-P	Field mustard	golgi, peroxisome, plasma membrane	26.21	17.65

Protein Annotations

EnsemblPlants:PGSC0003DMT400009294	EnsemblPlantsGene:PGSC0003DMG402003606	Gene3D:1.20.144.10	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	PANTHER:PTHR11247	PANTHER:PTHR11247:SF25	PFAM:PF01569	PGSC:PGSC0003DMG402003606
SUPFAM:SSF48317	TMHMM:TMhelix	UniParc:UPI000296630D	UniProt:M0ZVY8	MapMan:5.2.2.4	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402003606]

Coordinates

chr2:+:40233987..40235963

Molecular Weight (calculated)

34522.6 Da

IEP (calculated)

9.715

GRAVY (calculated)

0.436

Length

309 amino acids

Sequence
(BLAST)

001: MEMKNKIPLD TPSSSNYISK ISRVLNQKKH TSAGTKMTVA TTLVNRPILV SQLQFRGLNR FSTFKLDICG KFKFKKSISH CTLIPPKMVD SVENRAAAAG
101: DEGVSCGFLE QEALIDGSMN FSSDGVKPIL NSLSKWLMAA VFGIILLWRH DMEVLWATLG GVVNACLSTA LKGILNHERP VSTLRSDPGM PSSHAQSIFY
201: TVAFCIILMI KFFGFNEITA VISALIFAMG SYFSWLRVSQ RFHTLNQVAV GAILGFCFSI FWFWLWDAIV MKAFINHFWV RIVAVVGAAS FCVGFLLYVI
301: RNWVIEDLH

Best Arabidopsis Sequence Match ( AT5G66450.4 )
(BLAST)

001: MAASSSSLLL LHKPTYNFHF AASSVPTYIN SARFRISSSI FPLDRRRRRR IWSVSGFKSM ADLVKTNARR DGEDRFQALE QEAFISNSSS ELQNELVSDA
101: GDGIEAIANR LSKWIVAALF GSVLLLRHDG AALWAVIGSV SNSVLSVALK RILNQERPVA TLRSDPGMPS SHAQSISFIS VFSVFSVMEW LGTNVLSLFL
201: SGFILALGSY FTWLRVSQKL HTTSQVVVGA IVGSVYSTLW YVTWNSLVLE AFTSTFSVQI ALFLVAAASA LGFAVYVLLN WFKDDR

Arabidopsis Description

Phosphatidic acid phosphatase (PAP2) family protein [Source:TAIR;Acc:AT5G66450]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.