Factsheet for Bra006653.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus, peroxisome, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra003423.1-P
Bra006619.1-P
Bra007547.1-P
Bra012567.1-P
Bra013361.1-P
Bra014481.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50920.1	Bra003423.1-P	AT3G60600.1	21798944
AT3G50920.1	Bra007547.1-P	AT3G60600.1	21798944
AT3G50920.1	Bra014481.1-P	AT3G60600.1	21798944
AT3G50920.1	Bra012567.1-P	AT4G19030.1	21798944
AT3G50920.1	Bra013361.1-P	AT4G19030.1	21798944
AT3G50920.1	Bra002403.1-P	AT5G22290.1	21798944
AT3G50920.1	Bra006619.1-P	AT5G22290.1	21798944
AT3G50920.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34432	Canola	cytosol, plasma membrane, plastid	76.53	52.45
CDY52388	Canola	cytosol, endoplasmic reticulum, golgi	75.51	51.75
Bra012072.1-P	Field mustard	cytosol, peroxisome, plasma membrane	59.18	26.24
Bra037170.1-P	Field mustard	cytosol, peroxisome, plasma membrane	57.14	25.69
Bra031812.1-P	Field mustard	cytosol, peroxisome, plasma membrane	57.14	25.23
AT3G50920.1	Thale cress	plastid	70.41	24.73
VIT_04s0023g02150.t01	Wine grape	plasma membrane	44.9	19.64
Solyc02g062570.2.1	Tomato	golgi, plasma membrane, vacuole	42.86	19.44
Solyc02g062580.2.1	Tomato	plasma membrane	47.96	17.74
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	40.82	17.62
Bra036849.1-P	Field mustard	cytosol, golgi, peroxisome	41.84	17.52
PGSC0003DMT400040097	Potato	plastid	46.94	17.36
KRH76744	Soybean	plastid	46.94	16.08
Bra012879.1-P	Field mustard	golgi, peroxisome, plasma membrane	73.47	15.69
KRH28718	Soybean	plastid	45.92	15.57
HORVU6Hr1G068790.1	Barley	mitochondrion	41.84	15.13
TraesCS6B01G299400.1	Wheat	plastid	39.8	14.61
TraesCS6A01G271900.1	Wheat	mitochondrion	39.8	14.34
TraesCS6B01G299500.1	Wheat	plastid	39.8	14.34
TraesCS6A01G271800.1	Wheat	plastid	39.8	14.29
TraesCS6D01G252100.1	Wheat	plastid	39.8	14.29
OQU85552	Sorghum	plastid	38.78	13.87
Solyc02g084970.2.1	Tomato	plasma membrane, plastid	38.78	13.82
Os02t0704500-01	Rice	plastid	36.73	13.09
Zm00001d017767_P001	Maize	plastid	36.73	12.9
PGSC0003DMT400009294	Potato	cytosol, peroxisome, plasma membrane, plastid	37.76	11.97
Zm00001d051561_P001	Maize	plastid	33.67	10.51
PGSC0003DMT400009288	Potato	extracellular, plasma membrane, vacuole	12.24	8.96
Bra005332.1-P	Field mustard	extracellular	1.02	1.28
Bra028216.1-P	Field mustard	extracellular	1.02	1.27

Protein Annotations

EnsemblPlants:Bra006653.1	EnsemblPlants:Bra006653.1-P	EnsemblPlantsGene:Bra006653	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:P_Acid_Pase_2/haloperoxi_sf	PANTHER:PTHR11247	PANTHER:PTHR11247:SF25	SUPFAM:SSF48317	TMHMM:TMhelix	UniParc:UPI00025401A7
UniProt:M4CR12	MapMan:5.2.2.4	:	:	:	:

Description

AT3G50920 (E=4e-034) | phosphatidic acid phosphatase-related / PAP2-related

Coordinates

chrA03:-:4491459..4491857

Molecular Weight (calculated)

10772.2 Da

IEP (calculated)

11.525

GRAVY (calculated)

0.274

Length

98 amino acids

Sequence
(BLAST)

1: MVTGRGIEAI VNTLSKWVVS ILFASIILLR RDGTALWGII GSVSNSALSV VLKRILNQAR PATTSRTDPE MPSTHAQSIS FIYVFDVLSG KQLKRTWN

Best Arabidopsis Sequence Match ( AT3G50920.1 )
(BLAST)

001: MAASSSLLLL LHCPTCNFYF DSSSYLKRSR LSSYSSIISR GSPLFVSSFG SMTVKRFSSR VGSRSNDGNE QFGALEQESF INNSSEIRKD LVTGGGIEAI
101: VNRLSKWVVS VLFGSIILLR HDGAALWAVI GSISNSALSV VLKRILNQER PTTTLRSDPG MPSSHAQSIS FISVFAVLSV MEWLGTNGVS LFLSGLILAL
201: GSYFIRLRVS QKLHTSSQVV VGAIVGSLFC ILWYTMWNSL LREAFEASLL VQISVFLFAA TFALAFAAYV VLNWFKDER

Arabidopsis Description

LPPE1Lipid phosphate phosphatase epsilon 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4J220]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.