Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 7
- golgi 5
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005332.1-P | Field mustard | extracellular | 24.63 | 42.31 |
| Bra028216.1-P | Field mustard | extracellular | 24.63 | 41.77 |
| Solyc02g084970.2.1 | Tomato | plasma membrane, plastid | 64.18 | 31.27 |
| PGSC0003DMT400009294 | Potato | cytosol, peroxisome, plasma membrane, plastid | 64.93 | 28.16 |
| PGSC0003DMT400040097 | Potato | plastid | 48.51 | 24.53 |
| VIT_04s0023g02150.t01 | Wine grape | plasma membrane | 37.31 | 22.32 |
| Bra037170.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 34.33 | 21.1 |
| Bra012072.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 34.33 | 20.81 |
| GSMUA_Achr10P... | Banana | cytosol, peroxisome, plasma membrane | 35.07 | 20.7 |
| Bra031812.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 33.58 | 20.27 |
| CDY28991 | Canola | cytosol, endoplasmic reticulum, peroxisome | 31.34 | 18.75 |
| TraesCS6B01G299500.1 | Wheat | plastid | 35.82 | 17.65 |
| KRH28718 | Soybean | plastid | 38.06 | 17.65 |
| HORVU6Hr1G068790.1 | Barley | mitochondrion | 35.07 | 17.34 |
| CDY45229 | Canola | plastid | 34.33 | 17.29 |
| TraesCS6D01G252100.1 | Wheat | plastid | 35.07 | 17.22 |
| KRH76744 | Soybean | plastid | 36.57 | 17.13 |
| TraesCS6A01G271900.1 | Wheat | mitochondrion | 34.33 | 16.91 |
| CDY28990 | Canola | plasma membrane | 27.61 | 16.89 |
| TraesCS6A01G271800.1 | Wheat | plastid | 34.33 | 16.85 |
| TraesCS6B01G299400.1 | Wheat | plastid | 32.84 | 16.48 |
| CDY50985 | Canola | plastid | 34.33 | 16.43 |
| CDY65309 | Canola | plastid | 34.33 | 16.43 |
| OQU85552 | Sorghum | plastid | 32.84 | 16.06 |
| Os02t0704500-01 | Rice | plastid | 32.84 | 16.0 |
| Zm00001d017767_P001 | Maize | plastid | 32.09 | 15.41 |
| CDX73772 | Canola | mitochondrion, plastid | 28.36 | 15.14 |
| AT3G50920.1 | Thale cress | plastid | 31.34 | 15.05 |
| Zm00001d051561_P001 | Maize | plastid | 31.34 | 13.38 |
| Bra036849.1-P | Field mustard | cytosol, golgi, peroxisome | 23.13 | 13.25 |
| CDX77963 | Canola | cytosol, golgi, peroxisome | 23.13 | 13.25 |
| Bra006653.1-P | Field mustard | extracellular, plasma membrane | 8.96 | 12.24 |
| AT5G66450.3 | Thale cress | plastid | 25.37 | 11.04 |
| CDY52388 | Canola | cytosol, endoplasmic reticulum, golgi | 10.45 | 9.79 |
| CDY34432 | Canola | cytosol, plasma membrane, plastid | 10.45 | 9.79 |
| CDX90676 | Canola | golgi, peroxisome, plasma membrane | 31.34 | 9.15 |
| Bra012879.1-P | Field mustard | golgi, peroxisome, plasma membrane | 30.6 | 8.93 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400009288 | EnsemblPlantsGene:PGSC0003DMG401003606 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR11247 |
| PANTHER:PTHR11247:SF25 | PGSC:PGSC0003DMG401003606 | TMHMM:TMhelix | UniParc:UPI0002950983 | UniProt:M0ZVY3 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401003606]
Coordinates
chr2:+:40234806..40235963
Molecular Weight (calculated)
15445.9 Da
IEP (calculated)
7.571
GRAVY (calculated)
0.794
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSYFVSVEL YLLYLLFPYA GRTYLLTGSS SDFLNVPFIP SKTGAENDVH VFFSITLQSW LRVSQRFHTL NQVAVGAILG FCFSIFWFWL WDAIVMKAFI
101: NHFWVRIVAV VGAASFCVGF LLYVIRNWVI EDLH
101: NHFWVRIVAV VGAASFCVGF LLYVIRNWVI EDLH
001: MADLVKTNAR RDGEDRFQAL EQEAFISNSS SELQNELVSD AGDGIEAIAN RLSKWIVAAL FGSVLLLRHD GAALWAVIGS VSNSVLSVAL KRILNQERPV
101: ATLRSDPGMP SSHAQSISFI SVFSVFSVME WLGTNVLSLF LSGFILALGS YFTWLRVSQK LHTTSQVVVG AIVGSVYSTL WYVTWNSLVL EAFTSTFSVQ
201: IALFLVAAAS ALGFAVYVLL NWFKDDR
101: ATLRSDPGMP SSHAQSISFI SVFSVFSVME WLGTNVLSLF LSGFILALGS YFTWLRVSQK LHTTSQVVVG AIVGSVYSTL WYVTWNSLVL EAFTSTFSVQ
201: IALFLVAAAS ALGFAVYVLL NWFKDDR
Arabidopsis Description
Phosphatidic acid phosphatase (PAP2) family protein [Source:TAIR;Acc:AT5G66450]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.