CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 1
plasma membrane 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, nucleus, plasma membrane, plastid
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX70995
CDX71796
CDX78905
CDX88803
CDX89063
CDX92368
CDX98596
CDX99411
CDY01565
CDY09128
CDY35676
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50920.1	CDX67837	AT3G60600.1	21798944
AT3G50920.1	CDX71796	AT3G60600.1	21798944
AT3G50920.1	CDX89063	AT3G60600.1	21798944
AT3G50920.1	CDY41153	AT3G60600.1	21798944
AT3G50920.1	CDY48365	AT3G60600.1	21798944
AT3G50920.1	CDX78905	AT4G19030.1	21798944
AT3G50920.1	CDX98596	AT4G19030.1	21798944
AT3G50920.1	CDX99411	AT4G19030.1	21798944
AT3G50920.1	CDY01565	AT4G19030.1	21798944
AT3G50920.1	CDX70995	AT5G22290.1	21798944
AT3G50920.1	CDX88803	AT5G22290.1	21798944
AT3G50920.1	CDX92368	AT5G22290.1	21798944
AT3G50920.1	CDY09128	AT5G22290.1	21798944
AT3G50920.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52388	Canola	cytosol, endoplasmic reticulum, golgi	79.02	79.02
Bra006653.1-P	Field mustard	extracellular, plasma membrane	52.45	76.53
CDY28991	Canola	cytosol, endoplasmic reticulum, peroxisome	54.55	34.82
CDX73772	Canola	mitochondrion, plastid	48.95	27.89
AT3G50920.1	Thale cress	plastid	51.05	26.16
CDY45229	Canola	plastid	42.66	22.93
CDY28990	Canola	plasma membrane	34.27	22.37
CDY50985	Canola	plastid	42.66	21.79
CDY65309	Canola	plastid	41.26	21.07
VIT_04s0023g02150.t01	Wine grape	plasma membrane	32.87	20.98
Solyc02g062570.2.1	Tomato	golgi, plasma membrane, vacuole	30.77	20.37
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	32.17	20.26
Solyc02g062580.2.1	Tomato	plasma membrane	32.87	17.74
KRH28718	Soybean	plastid	34.27	16.95
PGSC0003DMT400040097	Potato	plastid	30.77	16.6
KRH76744	Soybean	plastid	32.87	16.43
CDX90676	Canola	golgi, peroxisome, plasma membrane	52.45	16.34
HORVU6Hr1G068790.1	Barley	mitochondrion	30.77	16.24
CDX77963	Canola	cytosol, golgi, peroxisome	25.87	15.81
TraesCS6A01G271800.1	Wheat	plastid	30.07	15.75
TraesCS6B01G299400.1	Wheat	plastid	29.37	15.73
Solyc02g084970.2.1	Tomato	plasma membrane, plastid	30.07	15.64
TraesCS6B01G299500.1	Wheat	plastid	28.67	15.07
TraesCS6A01G271900.1	Wheat	mitochondrion	27.97	14.71
TraesCS6D01G252100.1	Wheat	plastid	27.97	14.65
OQU85552	Sorghum	plastid	27.97	14.6
Os02t0704500-01	Rice	plastid	26.57	13.82
Zm00001d017767_P001	Maize	plastid	25.87	13.26
PGSC0003DMT400009294	Potato	cytosol, peroxisome, plasma membrane, plastid	27.97	12.95
Zm00001d051561_P001	Maize	plastid	25.17	11.46
PGSC0003DMT400009288	Potato	extracellular, plasma membrane, vacuole	9.79	10.45

Protein Annotations

EnsemblPlants:CDY34432	EnsemblPlantsGene:GSBRNA2T00056519001	GO:A0A078H9T7	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR11247	PANTHER:PTHR11247:SF25	ProteinID:CDY34432	ProteinID:CDY34432.1	TMHMM:TMhelix	UniParc:UPI0004EE3AB2
UniProt:A0A078H9T7	MapMan:5.2.2.4	:	:	:	:

Description

BnaC01g22010DBnaC01g22010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9T7]

Coordinates

chrLK032334:+:96242..98090

Molecular Weight (calculated)

15709.6 Da

IEP (calculated)

10.006

GRAVY (calculated)

-0.179

Length

143 amino acids

Sequence
(BLAST)

001: MAVLVQKFAR RDGSEQSGSV EQEASINGSP EIQYETVTGR GIEAIVNSLS TWVVSILFAS IILLRRDGTA LWGIIGSVSN SALSVVLKRI LNQARPATTS
101: RPDPEMSSTH AQSISFIFVS SNLNTINRSR KTRDEWETKS REV

Best Arabidopsis Sequence Match ( AT3G50920.1 )
(BLAST)

001: MAASSSLLLL LHCPTCNFYF DSSSYLKRSR LSSYSSIISR GSPLFVSSFG SMTVKRFSSR VGSRSNDGNE QFGALEQESF INNSSEIRKD LVTGGGIEAI
101: VNRLSKWVVS VLFGSIILLR HDGAALWAVI GSISNSALSV VLKRILNQER PTTTLRSDPG MPSSHAQSIS FISVFAVLSV MEWLGTNGVS LFLSGLILAL
201: GSYFIRLRVS QKLHTSSQVV VGAIVGSLFC ILWYTMWNSL LREAFEASLL VQISVFLFAA TFALAFAAYV VLNWFKDER

Arabidopsis Description

LPPE1Lipid phosphate phosphatase epsilon 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4J220]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.