Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- golgi 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014481.1-P | Field mustard | cytosol, golgi, plasma membrane | 99.16 | 99.16 |
| CDY48365 | Canola | cytosol | 98.33 | 98.33 |
| CDX71796 | Canola | cytosol | 96.23 | 96.64 |
| CDY41153 | Canola | cytosol | 95.4 | 95.8 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 94.56 | 94.17 |
| AT3G60600.1 | Thale cress | cytosol | 89.96 | 83.98 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 82.43 | 82.43 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 82.43 | 82.43 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 80.33 | 79.67 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 80.33 | 79.67 |
| CDY56247 | Canola | cytosol | 79.92 | 79.58 |
| CDY57247 | Canola | cytosol | 79.92 | 79.58 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 73.22 | 73.22 |
| Solyc01g090910.2.1 | Tomato | nucleus | 68.62 | 70.39 |
| KRH76164 | Soybean | endoplasmic reticulum | 69.87 | 69.29 |
| KRH65384 | Soybean | cytosol | 69.87 | 69.29 |
| Solyc10g018350.1.1 | Tomato | cytosol | 65.69 | 65.97 |
| Zm00001d049553_P001 | Maize | plasma membrane | 62.34 | 61.07 |
| EES14570 | Sorghum | cytosol, nucleus, plasma membrane | 61.51 | 60.25 |
| Os08t0156700-01 | Rice | plasma membrane | 61.09 | 60.08 |
| TraesCS7A01G300700.1 | Wheat | cytosol | 61.09 | 60.08 |
| TraesCS7D01G296400.1 | Wheat | cytosol | 61.09 | 60.08 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 59.41 | 59.41 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 58.58 | 58.58 |
| PGSC0003DMT400066920 | Potato | cytosol | 64.44 | 57.68 |
| GSMUA_Achr1P20280_001 | Banana | cytosol | 51.05 | 57.01 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 53.97 | 56.83 |
| CDX91914 | Canola | cytosol | 56.07 | 56.78 |
| CDX74330 | Canola | cytosol | 55.65 | 56.36 |
| TraesCS2A01G368500.1 | Wheat | cytosol | 58.58 | 56.22 |
| Zm00001d051288_P001 | Maize | cytosol | 52.72 | 56.0 |
| Solyc06g034220.2.1 | Tomato | nucleus | 53.14 | 55.95 |
| TraesCS2B01G385700.2 | Wheat | cytosol | 58.16 | 55.82 |
| HORVU2Hr1G091830.4 | Barley | cytosol | 58.16 | 55.82 |
| Os04t0534400-01 | Rice | cytosol | 58.16 | 55.6 |
| EES12559 | Sorghum | cytosol | 57.74 | 55.42 |
| TraesCS2D01G365300.2 | Wheat | cytosol | 57.74 | 55.42 |
| Zm00001d017390_P001 | Maize | cytosol | 51.88 | 55.11 |
| KXG31128 | Sorghum | cytosol | 51.05 | 54.22 |
| HORVU6Hr1G060760.3 | Barley | cytosol, golgi, plasma membrane | 51.05 | 53.51 |
| TraesCS6D01G220300.1 | Wheat | cytosol | 51.05 | 53.51 |
| TraesCS6B01G266100.1 | Wheat | cytosol, golgi, plasma membrane | 50.63 | 53.07 |
| TraesCS6A01G237600.1 | Wheat | cytosol, golgi, plasma membrane | 50.63 | 53.07 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 59.83 | 51.07 |
| GSMUA_Achr11P... | Banana | cytosol | 41.84 | 50.0 |
| HORVU7Hr1G071270.2 | Barley | mitochondrion | 60.25 | 48.81 |
| Os02t0643000-01 | Rice | plasma membrane | 51.46 | 47.49 |
| PGSC0003DMT400076826 | Potato | cytosol | 11.72 | 46.67 |
| Zm00001d025939_P003 | Maize | cytosol, golgi, plasma membrane | 56.9 | 45.64 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 18.83 | 44.12 |
| CDY28969 | Canola | cytosol | 39.75 | 43.58 |
| CDY40565 | Canola | cytosol | 39.75 | 43.58 |
| CDY43438 | Canola | cytosol | 39.75 | 43.18 |
| CDY25982 | Canola | cytosol | 39.33 | 42.73 |
| CDY33519 | Canola | cytosol | 38.91 | 42.66 |
| CDX77746 | Canola | cytosol | 38.91 | 42.66 |
| Zm00001d036342_P001 | Maize | cytosol | 38.49 | 36.8 |
| CDY06330 | Canola | cytosol | 42.26 | 29.45 |
| CDX93534 | Canola | cytosol | 41.84 | 26.95 |
| CDX95029 | Canola | cytosol | 41.0 | 26.2 |
| CDY32136 | Canola | cytosol | 40.59 | 25.53 |
| CDY31124 | Canola | cytosol | 40.59 | 25.46 |
| CDY22664 | Canola | plasma membrane | 42.26 | 23.82 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | GO:A0A078DPG1 | EnsemblPlants:CDX89063 | ProteinID:CDX89063 | ProteinID:CDX89063.1 |
| ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0016020 | EnsemblPlantsGene:GSBRNA2T00149188001 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold |
| InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF94 |
| InterPro:PapD-like_sf | SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI0004EE55AE | InterPro:VAP | SEG:seg |
Description
BnaA04g01230D
Coordinates
chrLK031857:+:846273..848002
Molecular Weight (calculated)
26506.8 Da
IEP (calculated)
8.300
GRAVY (calculated)
-0.466
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNSELLSVE PLDLQFPFEL RKQISCSLYL TNKTDNHVAF KVKTTNPKKY CVRPNTGVVL PRSTCEVLVT MQAQKEAPSD MQCKDKFLLQ GVTASPGVTA
101: KDVTPEMFSK EAGYLVEETK LRVTYVAPPQ PPSPVHEGSE EGSSPRASVS DNGGQASEFS FQRSSADKVE PQENTPEARA LITKLTEEKQ SAIQLNNKLQ
201: RELDQLRRDS KRSQSGIPLM YVLLVGLIGL ILGYIMKRT
101: KDVTPEMFSK EAGYLVEETK LRVTYVAPPQ PPSPVHEGSE EGSSPRASVS DNGGQASEFS FQRSSADKVE PQENTPEARA LITKLTEEKQ SAIQLNNKLQ
201: RELDQLRRDS KRSQSGIPLM YVLLVGLIGL ILGYIMKRT
001: MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI VDNKAGHQEN TSEARALITK
201: LTEEKQSAIQ LNNRLQRELD QLRRESKKSQ SGGIPFMYVL LVGLIGLILG YIMKRT
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI VDNKAGHQEN TSEARALITK
201: LTEEKQSAIQ LNNRLQRELD QLRRESKKSQ SGGIPFMYVL LVGLIGLILG YIMKRT
Arabidopsis Description
PVA11Vesicle-associated protein 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ95]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.