Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plastid 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G01770.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT2G01770.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT2G01770.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT2G01770.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026634.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 100.0 | 100.0 |
| CDY09418 | Canola | plasma membrane | 66.8 | 96.53 |
| AT2G01770.1 | Thale cress | cytosol, peroxisome, plasma membrane | 91.6 | 91.6 |
| CDY17642 | Canola | cytosol | 58.8 | 86.47 |
| KRH41739 | Soybean | cytosol | 78.8 | 81.41 |
| Solyc04g008060.2.1 | Tomato | plasma membrane | 77.2 | 80.75 |
| PGSC0003DMT400075781 | Potato | plasma membrane | 77.2 | 80.75 |
| KRH60441 | Soybean | cytosol | 79.6 | 80.57 |
| VIT_01s0011g06000.t01 | Wine grape | plasma membrane | 72.0 | 73.47 |
| VIT_01s0011g06010.t01 | Wine grape | cytosol | 70.8 | 72.24 |
| Os09t0396900-02 | Rice | plasma membrane | 70.4 | 71.54 |
| TraesCS7D01G413000.1 | Wheat | cytosol, peroxisome, plasma membrane | 70.0 | 71.43 |
| GSMUA_Achr7P12420_001 | Banana | cytosol | 72.0 | 71.15 |
| EES12303 | Sorghum | mitochondrion, nucleus, peroxisome | 69.6 | 70.73 |
| Os04t0463400-01 | Rice | cytosol | 70.8 | 70.24 |
| TraesCS7A01G420900.1 | Wheat | cytosol, peroxisome, plasma membrane | 61.2 | 70.18 |
| TraesCS2A01G336600.1 | Wheat | cytosol, peroxisome, plasma membrane | 68.4 | 69.51 |
| TraesCS2B01G345300.1 | Wheat | cytosol, peroxisome, plasma membrane | 68.4 | 69.51 |
| Zm00001d020395_P002 | Maize | plasma membrane | 69.6 | 69.32 |
| HORVU5Hr1G060370.2 | Barley | cytosol | 67.6 | 68.98 |
| HORVU4Hr1G031840.1 | Barley | cytosol | 67.6 | 68.98 |
| TraesCS5B01G202100.1 | Wheat | cytosol | 67.6 | 68.98 |
| TraesCS2D01G326300.1 | Wheat | cytosol | 68.4 | 68.95 |
| EER96705 | Sorghum | cytosol | 69.2 | 68.92 |
| TraesCS5A01G203400.1 | Wheat | cytosol | 67.2 | 68.57 |
| Zm00001d025623_P001 | Maize | cytosol, peroxisome, plasma membrane | 66.8 | 67.89 |
| GSMUA_Achr9P27290_001 | Banana | cytosol | 68.8 | 67.19 |
| TraesCS5D01G209900.2 | Wheat | cytosol | 67.2 | 65.62 |
| HORVU7Hr1G097360.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 38.8 | 62.58 |
| HORVU2Hr1G080870.6 | Barley | mitochondrion, plastid | 68.0 | 54.31 |
| Zm00001d005715_P004 | Maize | plasma membrane | 68.0 | 44.27 |
Protein Annotations
| EnsemblPlants:CDY64568 | EnsemblPlantsGene:GSBRNA2T00042354001 | GO:A0A078JDR3 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Ccc1_fam | ncoils:Coil | PANTHER:PTHR31851 | PANTHER:PTHR31851:SF9 | PFAM:PF01988 | ProteinID:CDY64568 |
| ProteinID:CDY64568.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002546A99 | UniProt:A0A078JDR3 | MapMan:24.2.12.1 |
| MapMan:25.4.5.3 | : | : | : | : | : |
Description
BnaC02g47710DBnaC02g47710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDR3]
Coordinates
chrLK034485:-:16418..18738
Molecular Weight (calculated)
26742.3 Da
IEP (calculated)
4.947
GRAVY (calculated)
0.314
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MATDEDMITR ISIEPEKQSL LDHHTEKHFT AGEVVRDIII GVSDGLTVPF ALAAGLSGAN ASSSIVLTAG IAEVAAGAIS MGLGGYLAAK SEADHYAREM
101: KREQEEIVAV PETEAAEVAE ILAQYGVEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG LVPLFPYMFI PQALNAVVAS
201: AAITLIALFI FGYAKGHFTG SRPFRSAFET TFIGAIASAA AFCLAKVVQH
101: KREQEEIVAV PETEAAEVAE ILAQYGVEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG LVPLFPYMFI PQALNAVVAS
201: AAITLIALFI FGYAKGHFTG SRPFRSAFET TFIGAIASAA AFCLAKVVQH
001: MSSEEDKITR ISIEPEKQTL LDHHTEKHFT AGEIVRDIII GVSDGLTVPF ALAAGLSGAN ASSSIVLTAG IAEVAAGAIS MGLGGYLAAK SEEDHYAREM
101: KREQEEIVAV PETEAAEVAE ILAQYGIEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG FIPLLPYMLI PHAMDAVVAS
201: VVITLFALFI FGYAKGHFTG SKPLRSAFET AFIGAIASAA AFCLAKVVQH
101: KREQEEIVAV PETEAAEVAE ILAQYGIEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG FIPLLPYMLI PHAMDAVVAS
201: VVITLFALFI FGYAKGHFTG SKPLRSAFET AFIGAIASAA AFCLAKVVQH
Arabidopsis Description
VIT1Vacuolar iron transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUA5]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.