Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G01770.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT2G01770.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT2G01770.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT2G01770.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09418 | Canola | plasma membrane | 83.53 | 82.08 |
| Bra024856.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 99.41 | 67.6 |
| HORVU7Hr1G097360.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 54.71 | 60.0 |
| CDY64568 | Canola | cytosol, peroxisome, plasma membrane | 86.47 | 58.8 |
| AT2G01770.1 | Thale cress | cytosol, peroxisome, plasma membrane | 85.88 | 58.4 |
| Solyc04g008060.2.1 | Tomato | plasma membrane | 77.65 | 55.23 |
| PGSC0003DMT400075781 | Potato | plasma membrane | 77.65 | 55.23 |
| KRH41739 | Soybean | cytosol | 72.94 | 51.24 |
| KRH60441 | Soybean | cytosol | 74.12 | 51.01 |
| VIT_01s0011g06000.t01 | Wine grape | plasma membrane | 71.76 | 49.8 |
| VIT_01s0011g06010.t01 | Wine grape | cytosol | 70.59 | 48.98 |
| TraesCS7D01G413000.1 | Wheat | cytosol, peroxisome, plasma membrane | 69.41 | 48.16 |
| Os09t0396900-02 | Rice | plasma membrane | 68.82 | 47.56 |
| EES12303 | Sorghum | mitochondrion, nucleus, peroxisome | 68.82 | 47.56 |
| GSMUA_Achr7P12420_001 | Banana | cytosol | 70.0 | 47.04 |
| Os04t0463400-01 | Rice | cytosol | 68.82 | 46.43 |
| Zm00001d025623_P001 | Maize | cytosol, peroxisome, plasma membrane | 67.06 | 46.34 |
| GSMUA_Achr9P27290_001 | Banana | cytosol | 69.41 | 46.09 |
| TraesCS2A01G336600.1 | Wheat | cytosol, peroxisome, plasma membrane | 66.47 | 45.94 |
| TraesCS2B01G345300.1 | Wheat | cytosol, peroxisome, plasma membrane | 66.47 | 45.94 |
| TraesCS2D01G326300.1 | Wheat | cytosol | 65.88 | 45.16 |
| TraesCS7A01G420900.1 | Wheat | cytosol, peroxisome, plasma membrane | 57.65 | 44.95 |
| TraesCS5B01G202100.1 | Wheat | cytosol | 64.12 | 44.49 |
| HORVU4Hr1G031840.1 | Barley | cytosol | 64.12 | 44.49 |
| HORVU5Hr1G060370.2 | Barley | cytosol | 64.12 | 44.49 |
| TraesCS5A01G203400.1 | Wheat | cytosol | 63.53 | 44.08 |
| Zm00001d020395_P002 | Maize | plasma membrane | 62.94 | 42.63 |
| TraesCS5D01G209900.2 | Wheat | cytosol | 64.12 | 42.58 |
| EER96705 | Sorghum | cytosol | 62.35 | 42.23 |
| HORVU2Hr1G080870.6 | Barley | mitochondrion, plastid | 65.88 | 35.78 |
| Zm00001d005715_P004 | Maize | plasma membrane | 62.94 | 27.86 |
Protein Annotations
| EnsemblPlants:CDY17642 | EnsemblPlantsGene:GSBRNA2T00001856001 | GO:A0A078FY03 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Ccc1_fam | ncoils:Coil | PANTHER:PTHR31851 | PANTHER:PTHR31851:SF9 | PFAM:PF01988 | ProteinID:CDY17642 |
| ProteinID:CDY17642.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE096A | UniProt:A0A078FY03 | MapMan:24.2.12.1 |
| MapMan:25.4.5.3 | : | : | : | : | : |
Description
BnaA06g34610DBnaA06g34610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FY03]
Coordinates
chrLK032076:-:289877..292700
Molecular Weight (calculated)
18611.6 Da
IEP (calculated)
5.258
GRAVY (calculated)
0.271
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLGGYLAAK SEADHYAREV KREQEEIKTI PETEAAEVAE MLSDYGVEPH EYSPVVNALR KNPQAWVDFM MRFELGLEKP EPKRALQSAF TIAIAYVLGG
101: FIPLFPYIFI PQAVDAVVAS VVITLLSLFI FGYGKGHFTG SRPFKSAFET AFIGAVASAA AFCLAKVVQL
101: FIPLFPYIFI PQAVDAVVAS VVITLLSLFI FGYGKGHFTG SRPFKSAFET AFIGAVASAA AFCLAKVVQL
001: MSSEEDKITR ISIEPEKQTL LDHHTEKHFT AGEIVRDIII GVSDGLTVPF ALAAGLSGAN ASSSIVLTAG IAEVAAGAIS MGLGGYLAAK SEEDHYAREM
101: KREQEEIVAV PETEAAEVAE ILAQYGIEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG FIPLLPYMLI PHAMDAVVAS
201: VVITLFALFI FGYAKGHFTG SKPLRSAFET AFIGAIASAA AFCLAKVVQH
101: KREQEEIVAV PETEAAEVAE ILAQYGIEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG FIPLLPYMLI PHAMDAVVAS
201: VVITLFALFI FGYAKGHFTG SKPLRSAFET AFIGAIASAA AFCLAKVVQH
Arabidopsis Description
VIT1Vacuolar iron transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUA5]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.