CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025623_P001	Maize	cytosol, peroxisome, plasma membrane	91.87	91.87
TraesCS2B01G345300.1	Wheat	cytosol, peroxisome, plasma membrane	89.02	89.02
TraesCS2A01G336600.1	Wheat	cytosol, peroxisome, plasma membrane	88.62	88.62
Os04t0463400-01	Rice	cytosol	90.24	88.1
TraesCS2D01G326300.1	Wheat	cytosol	88.62	87.9
VIT_01s0011g06000.t01	Wine grape	plasma membrane	73.98	74.29
GSMUA_Achr9P27290_001	Banana	cytosol	76.42	73.44
VIT_01s0011g06010.t01	Wine grape	cytosol	71.95	72.24
PGSC0003DMT400075781	Potato	plasma membrane	69.51	71.55
Solyc04g008060.2.1	Tomato	plasma membrane	69.51	71.55
KRH41739	Soybean	cytosol	69.92	71.07
EER96705	Sorghum	cytosol	72.36	70.92
CDY09418	Canola	plasma membrane	49.19	69.94
HORVU2Hr1G080870.6	Barley	mitochondrion, plastid	88.62	69.65
CDY64568	Canola	cytosol, peroxisome, plasma membrane	70.73	69.6
Bra026634.1-P	Field mustard	cytosol, peroxisome, plasma membrane	70.73	69.6
CDY17642	Canola	cytosol	47.56	68.82
KRH60441	Soybean	cytosol	68.7	68.42
AT2G01770.1	Thale cress	cytosol, peroxisome, plasma membrane	68.7	67.6
Bra024856.1-P	Field mustard	cytosol, peroxisome, plasma membrane	66.67	65.6

Protein Annotations

MapMan:24.2.12.1	MapMan:25.4.5.3	EntrezGene:8073445	UniProt:C5Y9X0	InterPro:Ccc1_fam	ncoils:Coil
EnsemblPlants:EES12303	ProteinID:EES12303	ProteinID:EES12303.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005381
GO:GO:0005384	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0006810	GO:GO:0006880	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0019725	GO:GO:0030026	GO:GO:0034755	GO:GO:0071281	GO:GO:0071421
PFAM:PF01988	PANTHER:PTHR31851	PANTHER:PTHR31851:SF19	EnsemblPlantsGene:SORBI_3006G109000	TMHMM:TMhelix	UniParc:UPI0001A8700F
RefSeq:XP_002447975.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:47822129..47824494

Molecular Weight (calculated)

26107.7 Da

IEP (calculated)

6.528

GRAVY (calculated)

0.178

Length

246 amino acids

Sequence
(BLAST)

001: MDGGGATRGQ PMLAKRPSHR ERHFTAGEVV RDVIMGVSDG LTVPFALAAG LSGASAPSSL VLTAGLAEVA AGAISMGLGG YLAAQSEADH YKREMKREQE
101: EIITVPDTEA AEIGEIMSQY GLEPHEYGPV IDGLRRNPQA WLDFMMRFEL GLEKPDPKRA LQSAFTIALS YVIGGLVPLL PYMFLSTAQN AMLTSVGVTL
201: VALLFFGYIK GRFTGNRPFI SAVQTAIIGA LASAAAYGMA KAVQAR

Best Arabidopsis Sequence Match ( AT2G01770.1 )
(BLAST)

001: MSSEEDKITR ISIEPEKQTL LDHHTEKHFT AGEIVRDIII GVSDGLTVPF ALAAGLSGAN ASSSIVLTAG IAEVAAGAIS MGLGGYLAAK SEEDHYAREM
101: KREQEEIVAV PETEAAEVAE ILAQYGIEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG FIPLLPYMLI PHAMDAVVAS
201: VVITLFALFI FGYAKGHFTG SKPLRSAFET AFIGAIASAA AFCLAKVVQH

Arabidopsis Description

VIT1Vacuolar iron transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUA5]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.