Factsheet for PGSC0003DMT400075781

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 1
cytosol 1
plastid 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01770.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT2G01770.1	PGSC0003DMT400073246	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g008060.2.1	Tomato	plasma membrane	99.16	99.16
KRH41739	Soybean	cytosol	82.01	80.99
KRH60441	Soybean	cytosol	82.01	79.35
VIT_01s0011g06000.t01	Wine grape	plasma membrane	81.17	79.18
AT2G01770.1	Thale cress	cytosol, peroxisome, plasma membrane	82.01	78.4
CDY17642	Canola	cytosol	55.23	77.65
CDY64568	Canola	cytosol, peroxisome, plasma membrane	80.75	77.2
Bra026634.1-P	Field mustard	cytosol, peroxisome, plasma membrane	80.75	77.2
Bra024856.1-P	Field mustard	cytosol, peroxisome, plasma membrane	79.92	76.4
VIT_01s0011g06010.t01	Wine grape	cytosol	78.24	76.33
CDY09418	Canola	plasma membrane	54.81	75.72
Os09t0396900-02	Rice	plasma membrane	74.9	72.76
HORVU4Hr1G031840.1	Barley	cytosol	73.64	71.84
HORVU5Hr1G060370.2	Barley	cytosol	73.64	71.84
TraesCS5B01G202100.1	Wheat	cytosol	73.64	71.84
TraesCS5A01G203400.1	Wheat	cytosol	73.22	71.43
GSMUA_Achr7P12420_001	Banana	cytosol	73.64	69.57
EES12303	Sorghum	mitochondrion, nucleus, peroxisome	71.55	69.51
TraesCS2B01G345300.1	Wheat	cytosol, peroxisome, plasma membrane	71.55	69.51
Zm00001d025623_P001	Maize	cytosol, peroxisome, plasma membrane	71.13	69.11
TraesCS2A01G336600.1	Wheat	cytosol, peroxisome, plasma membrane	71.13	69.11
TraesCS7D01G413000.1	Wheat	cytosol, peroxisome, plasma membrane	70.71	68.98
TraesCS2D01G326300.1	Wheat	cytosol	71.13	68.55
TraesCS5D01G209900.2	Wheat	cytosol	73.22	68.36
GSMUA_Achr9P27290_001	Banana	cytosol	73.22	68.36
Os04t0463400-01	Rice	cytosol	71.97	68.25
TraesCS7A01G420900.1	Wheat	cytosol, peroxisome, plasma membrane	61.92	67.89
Zm00001d020395_P002	Maize	plasma membrane	71.13	67.73
EER96705	Sorghum	cytosol	71.13	67.73
HORVU7Hr1G097360.1	Barley	cytosol, endoplasmic reticulum, peroxisome	39.75	61.29
HORVU2Hr1G080870.6	Barley	mitochondrion, plastid	71.13	54.31
Zm00001d005715_P004	Maize	plasma membrane	71.13	44.27
PGSC0003DMT400000004	Potato	plasma membrane	24.69	22.1

Protein Annotations

MapMan:24.2.12.1	MapMan:25.4.5.3	InterPro:Ccc1_fam	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006880	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0055072	UniProt:M1CVP5
PFAM:PF01988	EnsemblPlantsGene:PGSC0003DMG400029467	PGSC:PGSC0003DMG400029467	EnsemblPlants:PGSC0003DMT400075781	PANTHER:PTHR31851	PANTHER:PTHR31851:SF9
TMHMM:TMhelix	UniParc:UPI000295568B	SEG:seg	:	:	:

Description

Protein CCC1 [Source:PGSC_GENE;Acc:PGSC0003DMG400029467]

Coordinates

chr4:-:2719630..2722919

Molecular Weight (calculated)

25371.8 Da

IEP (calculated)

4.791

GRAVY (calculated)

0.367

Length

239 amino acids

Sequence
(BLAST)

001: MAGESEQSLL DQHKEKHFTA GEIVRDIIIG VSDGLTVPFA LAAGLSGANA SSSIILTAGI AEVAAGAISM GLGGYLAAKS ESDHYMRELK REEEEIISVP
101: DTEAAEIAEI LSEYGIQPHE YSPVVNALRK NPQAWLDFMM KFELGLEKPD PRRALQSAFT IAIAYILGGF VPLVPYMLIP IARQAVVASV VVTILALLIF
201: GFAKGYFTGN RPFRSAFETA LIGAVASAAA FGLAKAVQG

Best Arabidopsis Sequence Match ( AT2G01770.1 )
(BLAST)

001: MSSEEDKITR ISIEPEKQTL LDHHTEKHFT AGEIVRDIII GVSDGLTVPF ALAAGLSGAN ASSSIVLTAG IAEVAAGAIS MGLGGYLAAK SEEDHYAREM
101: KREQEEIVAV PETEAAEVAE ILAQYGIEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG FIPLLPYMLI PHAMDAVVAS
201: VVITLFALFI FGYAKGHFTG SKPLRSAFET AFIGAIASAA AFCLAKVVQH

Arabidopsis Description

VIT1Vacuolar iron transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUA5]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.