CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01770.1	KRH11076	AT4G19030.1	21798944
AT2G01770.1	KRH21197	AT4G19030.1	21798944
AT2G01770.1	KRH42923	AT4G19030.1	21798944
AT2G01770.1	KRH42926	AT4G19030.1	21798944
AT2G01770.1	KRH45251	AT4G19030.1	21798944
AT2G01770.1	KRH59035	AT4G19030.1	21798944
AT2G01770.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60441	Soybean	cytosol	93.8	91.9
PGSC0003DMT400075781	Potato	plasma membrane	80.99	82.01
Solyc04g008060.2.1	Tomato	plasma membrane	80.17	81.17
AT2G01770.1	Thale cress	cytosol, peroxisome, plasma membrane	82.23	79.6
Bra026634.1-P	Field mustard	cytosol, peroxisome, plasma membrane	81.41	78.8
CDY64568	Canola	cytosol, peroxisome, plasma membrane	81.41	78.8
VIT_01s0011g06000.t01	Wine grape	plasma membrane	77.69	76.73
CDY09418	Canola	plasma membrane	54.55	76.3
Bra024856.1-P	Field mustard	cytosol, peroxisome, plasma membrane	76.45	74.0
VIT_01s0011g06010.t01	Wine grape	cytosol	74.38	73.47
CDY17642	Canola	cytosol	51.24	72.94
Os09t0396900-02	Rice	plasma membrane	72.31	71.14
Os04t0463400-01	Rice	cytosol	73.55	70.63
TraesCS2B01G345300.1	Wheat	cytosol, peroxisome, plasma membrane	71.49	70.33
EES12303	Sorghum	mitochondrion, nucleus, peroxisome	71.07	69.92
TraesCS2A01G336600.1	Wheat	cytosol, peroxisome, plasma membrane	71.07	69.92
HORVU5Hr1G060370.2	Barley	cytosol	69.83	68.98
HORVU4Hr1G031840.1	Barley	cytosol	69.83	68.98
TraesCS5B01G202100.1	Wheat	cytosol	69.83	68.98
TraesCS2D01G326300.1	Wheat	cytosol	70.66	68.95
GSMUA_Achr7P12420_001	Banana	cytosol	71.9	68.77
TraesCS5A01G203400.1	Wheat	cytosol	69.42	68.57
TraesCS7D01G413000.1	Wheat	cytosol, peroxisome, plasma membrane	69.01	68.16
Zm00001d025623_P001	Maize	cytosol, peroxisome, plasma membrane	69.01	67.89
TraesCS7A01G420900.1	Wheat	cytosol, peroxisome, plasma membrane	60.74	67.43
GSMUA_Achr9P27290_001	Banana	cytosol	71.07	67.19
Zm00001d020395_P002	Maize	plasma membrane	69.42	66.93
EER96705	Sorghum	cytosol	68.59	66.14
TraesCS5D01G209900.2	Wheat	cytosol	69.42	65.62
HORVU7Hr1G097360.1	Barley	cytosol, endoplasmic reticulum, peroxisome	38.02	59.35
HORVU2Hr1G080870.6	Barley	mitochondrion, plastid	71.07	54.95
Zm00001d005715_P004	Maize	plasma membrane	68.59	43.23
KRH00672	Soybean	plasma membrane	24.79	22.56

Protein Annotations

EntrezGene:100814227	MapMan:24.2.12.1	MapMan:25.4.5.3	EMBL:ACUP02004778	InterPro:Ccc1_fam	ncoils:Coil
EnsemblPlantsGene:GLYMA_08G047500	GO:GO:0003674	GO:GO:0005215	GO:GO:0005381	GO:GO:0005384	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810
GO:GO:0006880	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725
GO:GO:0030026	GO:GO:0034755	GO:GO:0071281	GO:GO:0071421	UniProt:I1KQD6	EnsemblPlants:KRH41739
ProteinID:KRH41739	ProteinID:KRH41739.1	PFAM:PF01988	PANTHER:PTHR31851	PANTHER:PTHR31851:SF9	TMHMM:TMhelix
UniParc:UPI0002337F53	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:3714172..3716513

Molecular Weight (calculated)

25629.2 Da

IEP (calculated)

5.838

GRAVY (calculated)

0.385

Length

242 amino acids

Sequence
(BLAST)

001: MAATLEPEKK SLLRHHSEKH FTAGEIVRDI IIGVSDGLTV PFALAAGLSG ANATSSIVLT AGIAEVAAGA ISMGLGGYLA AKSESDHYAR ELKREQEEII
101: AVPDTEAAEV AEIMAQYGIE AHEYAPVVSA LRKNPQAWLD FMMKFELGLE KPDPRRALHS AMTIAIAYIL GGVVPLLPYM FIPEAAEAVV FSVLVTLVAL
201: LIFGYAKGHF TGNKPFRSAL ETALIGAIAS AAAFGLAKAF HP

Best Arabidopsis Sequence Match ( AT2G01770.1 )
(BLAST)

001: MSSEEDKITR ISIEPEKQTL LDHHTEKHFT AGEIVRDIII GVSDGLTVPF ALAAGLSGAN ASSSIVLTAG IAEVAAGAIS MGLGGYLAAK SEEDHYAREM
101: KREQEEIVAV PETEAAEVAE ILAQYGIEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG FIPLLPYMLI PHAMDAVVAS
201: VVITLFALFI FGYAKGHFTG SKPLRSAFET AFIGAIASAA AFCLAKVVQH

Arabidopsis Description

VIT1Vacuolar iron transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUA5]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.