Factsheet for Solyc04g008060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 1
cytosol 1
plastid 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01770.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT2G01770.1	Solyc03g005980.2.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075781	Potato	plasma membrane	99.16	99.16
KRH41739	Soybean	cytosol	81.17	80.17
VIT_01s0011g06000.t01	Wine grape	plasma membrane	81.17	79.18
KRH60441	Soybean	cytosol	81.59	78.95
AT2G01770.1	Thale cress	cytosol, peroxisome, plasma membrane	81.59	78.0
CDY17642	Canola	cytosol	55.23	77.65
Bra026634.1-P	Field mustard	cytosol, peroxisome, plasma membrane	80.75	77.2
CDY64568	Canola	cytosol, peroxisome, plasma membrane	80.75	77.2
Bra024856.1-P	Field mustard	cytosol, peroxisome, plasma membrane	79.92	76.4
VIT_01s0011g06010.t01	Wine grape	cytosol	78.24	76.33
CDY09418	Canola	plasma membrane	54.81	75.72
Os09t0396900-02	Rice	plasma membrane	74.9	72.76
HORVU4Hr1G031840.1	Barley	cytosol	73.64	71.84
HORVU5Hr1G060370.2	Barley	cytosol	73.64	71.84
TraesCS5B01G202100.1	Wheat	cytosol	73.64	71.84
TraesCS5A01G203400.1	Wheat	cytosol	73.22	71.43
GSMUA_Achr7P12420_001	Banana	cytosol	73.64	69.57
EES12303	Sorghum	mitochondrion, nucleus, peroxisome	71.55	69.51
TraesCS2B01G345300.1	Wheat	cytosol, peroxisome, plasma membrane	71.55	69.51
Zm00001d025623_P001	Maize	cytosol, peroxisome, plasma membrane	71.13	69.11
TraesCS2A01G336600.1	Wheat	cytosol, peroxisome, plasma membrane	71.13	69.11
TraesCS7D01G413000.1	Wheat	cytosol, peroxisome, plasma membrane	70.71	68.98
TraesCS2D01G326300.1	Wheat	cytosol	71.13	68.55
TraesCS5D01G209900.2	Wheat	cytosol	73.22	68.36
GSMUA_Achr9P27290_001	Banana	cytosol	73.22	68.36
TraesCS7A01G420900.1	Wheat	cytosol, peroxisome, plasma membrane	62.34	68.35
Os04t0463400-01	Rice	cytosol	71.97	68.25
Zm00001d020395_P002	Maize	plasma membrane	71.13	67.73
EER96705	Sorghum	cytosol	71.13	67.73
HORVU7Hr1G097360.1	Barley	cytosol, endoplasmic reticulum, peroxisome	39.33	60.65
HORVU2Hr1G080870.6	Barley	mitochondrion, plastid	71.13	54.31
Zm00001d005715_P004	Maize	plasma membrane	71.13	44.27
Solyc01g091850.2.1	Tomato	cytosol, peroxisome, plasma membrane	25.94	23.4

Protein Annotations

MapMan:24.2.12.1	MapMan:25.4.5.3	InterPro:Ccc1_fam	ncoils:Coil	GO:GO:0003674	GO:GO:0005215
GO:GO:0005381	GO:GO:0005384	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0006880	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0030026	GO:GO:0034755	GO:GO:0055072
GO:GO:0071281	GO:GO:0071421	UniProt:K4BNW2	PFAM:PF01988	PANTHER:PTHR31851	PANTHER:PTHR31851:SF9
EnsemblPlantsGene:Solyc04g008060.2	EnsemblPlants:Solyc04g008060.2.1	TMHMM:TMhelix	UniParc:UPI0002766D84	SEG:seg	:

Description

Vacuolar iron transporter 1 [Source:Projected from Arabidopsis thaliana (AT2G01770) UniProtKB/Swiss-Prot;Acc:Q9ZUA5]

Coordinates

chr4:-:1717764..1721092

Molecular Weight (calculated)

25414.8 Da

IEP (calculated)

4.928

GRAVY (calculated)

0.365

Length

239 amino acids

Sequence
(BLAST)

001: MAGESEQSLL DQHKEKHFTA GEIVRDIIIG VSDGLTVPFA LAAGLSGANA SSSIILTAGI AEVAAGAISM GLGGYLAAKS EADHYMRELK REEEEIISVP
101: DTEAAEIAEI LSEYGIQPHE YSPVVNALRK NRQAWLDFMM KFELGLEKPD PRRALQSAFT IAIAYILGGF VPLVPYMLIP IARQAVVASV VVTILALLIF
201: GFAKGYFTGN RPFRSAFETA LIGAVASAAA FGLAKAVQG

Best Arabidopsis Sequence Match ( AT2G01770.1 )
(BLAST)

001: MSSEEDKITR ISIEPEKQTL LDHHTEKHFT AGEIVRDIII GVSDGLTVPF ALAAGLSGAN ASSSIVLTAG IAEVAAGAIS MGLGGYLAAK SEEDHYAREM
101: KREQEEIVAV PETEAAEVAE ILAQYGIEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG FIPLLPYMLI PHAMDAVVAS
201: VVITLFALFI FGYAKGHFTG SKPLRSAFET AFIGAIASAA AFCLAKVVQH

Arabidopsis Description

VIT1Vacuolar iron transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUA5]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.