CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01770.1	KRH11076	AT4G19030.1	21798944
AT2G01770.1	KRH21197	AT4G19030.1	21798944
AT2G01770.1	KRH42923	AT4G19030.1	21798944
AT2G01770.1	KRH42926	AT4G19030.1	21798944
AT2G01770.1	KRH45251	AT4G19030.1	21798944
AT2G01770.1	KRH59035	AT4G19030.1	21798944
AT2G01770.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41739	Soybean	cytosol	91.9	93.8
PGSC0003DMT400075781	Potato	plasma membrane	79.35	82.01
Solyc04g008060.2.1	Tomato	plasma membrane	78.95	81.59
AT2G01770.1	Thale cress	cytosol, peroxisome, plasma membrane	81.78	80.8
Bra026634.1-P	Field mustard	cytosol, peroxisome, plasma membrane	80.57	79.6
CDY64568	Canola	cytosol, peroxisome, plasma membrane	80.57	79.6
VIT_01s0011g06000.t01	Wine grape	plasma membrane	76.52	77.14
CDY09418	Canola	plasma membrane	53.44	76.3
Bra024856.1-P	Field mustard	cytosol, peroxisome, plasma membrane	76.11	75.2
CDY17642	Canola	cytosol	51.01	74.12
VIT_01s0011g06010.t01	Wine grape	cytosol	72.87	73.47
Os09t0396900-02	Rice	plasma membrane	71.26	71.54
TraesCS5B01G202100.1	Wheat	cytosol	68.83	69.39
HORVU5Hr1G060370.2	Barley	cytosol	68.83	69.39
HORVU4Hr1G031840.1	Barley	cytosol	68.83	69.39
TraesCS5A01G203400.1	Wheat	cytosol	68.42	68.98
GSMUA_Achr7P12420_001	Banana	cytosol	70.45	68.77
TraesCS2B01G345300.1	Wheat	cytosol, peroxisome, plasma membrane	68.42	68.7
EES12303	Sorghum	mitochondrion, nucleus, peroxisome	68.42	68.7
TraesCS2A01G336600.1	Wheat	cytosol, peroxisome, plasma membrane	68.02	68.29
Os04t0463400-01	Rice	cytosol	69.64	68.25
TraesCS2D01G326300.1	Wheat	cytosol	68.02	67.74
TraesCS7D01G413000.1	Wheat	cytosol, peroxisome, plasma membrane	66.8	67.35
GSMUA_Achr9P27290_001	Banana	cytosol	69.64	67.19
Zm00001d025623_P001	Maize	cytosol, peroxisome, plasma membrane	66.4	66.67
TraesCS7A01G420900.1	Wheat	cytosol, peroxisome, plasma membrane	58.7	66.51
Zm00001d020395_P002	Maize	plasma membrane	67.21	66.14
TraesCS5D01G209900.2	Wheat	cytosol	68.42	66.02
EER96705	Sorghum	cytosol	66.4	65.34
HORVU7Hr1G097360.1	Barley	cytosol, endoplasmic reticulum, peroxisome	36.84	58.71
HORVU2Hr1G080870.6	Barley	mitochondrion, plastid	68.83	54.31
Zm00001d005715_P004	Maize	plasma membrane	66.4	42.71
KRH00672	Soybean	plasma membrane	24.7	22.93

Protein Annotations

EntrezGene:100793585	MapMan:24.2.12.1	MapMan:25.4.5.3	EMBL:ACUP02003364	InterPro:Ccc1_fam	EnsemblPlantsGene:GLYMA_05G240600
GO:GO:0003674	GO:GO:0005215	GO:GO:0005381	GO:GO:0005384	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0006880
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0030026
GO:GO:0034755	GO:GO:0071281	GO:GO:0071421	UniProt:I1K5I4	EnsemblPlants:KRH60441	ProteinID:KRH60441
ProteinID:KRH60441.1	PFAM:PF01988	PANTHER:PTHR31851	PANTHER:PTHR31851:SF9	TMHMM:TMhelix	UniParc:UPI000233A700
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:41566791..41569485

Molecular Weight (calculated)

26282.9 Da

IEP (calculated)

6.311

GRAVY (calculated)

0.302

Length

247 amino acids

Sequence
(BLAST)

001: MAATEHRLSL EPEKKNLLRH HTEKHFTAGE IVRDIIIGVS DGLTVPFALA AGLSGANATS SIVLTAGIAE VAAGAISMGL GGYLAAKSET DHYARELKRE
101: QEEIIAVPDT EAAEVAETLA QYGIEAHEYA PVVNALRKNP QAWLDFMMKF ELGLEKPDPR RALHSAMTIA IAYILGGVVP LVPYMFIQKA AEAVVFSVVV
201: TLVALLIFGY AKGHFTGNKP FRSALETALI GAIASAAAFG LAKAFNP

Best Arabidopsis Sequence Match ( AT2G01770.1 )
(BLAST)

001: MSSEEDKITR ISIEPEKQTL LDHHTEKHFT AGEIVRDIII GVSDGLTVPF ALAAGLSGAN ASSSIVLTAG IAEVAAGAIS MGLGGYLAAK SEEDHYAREM
101: KREQEEIVAV PETEAAEVAE ILAQYGIEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG FIPLLPYMLI PHAMDAVVAS
201: VVITLFALFI FGYAKGHFTG SKPLRSAFET AFIGAIASAA AFCLAKVVQH

Arabidopsis Description

VIT1Vacuolar iron transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUA5]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.