Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G413000.1 | Wheat | cytosol, peroxisome, plasma membrane | 93.58 | 83.27 |
| TraesCS2A01G336600.1 | Wheat | cytosol, peroxisome, plasma membrane | 78.44 | 69.51 |
| HORVU7Hr1G097360.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 48.17 | 67.74 |
| VIT_01s0011g06000.t01 | Wine grape | plasma membrane | 72.48 | 64.49 |
| TraesCS5A01G203400.1 | Wheat | cytosol | 71.56 | 63.67 |
| GSMUA_Achr9P27290_001 | Banana | cytosol | 73.39 | 62.5 |
| Solyc04g008060.2.1 | Tomato | plasma membrane | 68.35 | 62.34 |
| PGSC0003DMT400075781 | Potato | plasma membrane | 67.89 | 61.92 |
| VIT_01s0011g06010.t01 | Wine grape | cytosol | 69.27 | 61.63 |
| Bra026634.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 70.18 | 61.2 |
| CDY64568 | Canola | cytosol, peroxisome, plasma membrane | 70.18 | 61.2 |
| AT2G01770.1 | Thale cress | cytosol, peroxisome, plasma membrane | 69.72 | 60.8 |
| KRH41739 | Soybean | cytosol | 67.43 | 60.74 |
| Bra024856.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 67.89 | 59.2 |
| KRH60441 | Soybean | cytosol | 66.51 | 58.7 |
| CDY17642 | Canola | cytosol | 44.95 | 57.65 |
| CDY09418 | Canola | plasma membrane | 44.95 | 56.65 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G420900.1 | EnsemblPlantsGene:TraesCS7A01G420900 | InterPro:Ccc1_fam | ncoils:Coil | PANTHER:PTHR31851 | PANTHER:PTHR31851:SF19 |
| PFAM:PF01988 | SEG:seg | TMHMM:TMhelix | MapMan:24.2.12.1 | MapMan:25.4.5.3 | : |
Description
No Description!
Coordinates
chr7A:+:611969535..611973168
Molecular Weight (calculated)
22945.9 Da
IEP (calculated)
4.759
GRAVY (calculated)
0.415
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGASEGREQ PMLEKELISS HKEHHFTAGE VVRDVIMGVS DGLTVPFALA AGLSGASAAS SLVLTAGLAE VAAGAISMGL GGYLAAKSEA DHYELELRRE
101: QEEIIAVPEI EAAEIGEIMS FELGLEKPYP RRALQSALTI ALSYVVGGLV PLMPYMLIPT AHDAMRTSVV LTLVALFFFG YVKGRFTGSR PLFSALQTTF
201: IGAVASAAAY GIAKVVQA
101: QEEIIAVPEI EAAEIGEIMS FELGLEKPYP RRALQSALTI ALSYVVGGLV PLMPYMLIPT AHDAMRTSVV LTLVALFFFG YVKGRFTGSR PLFSALQTTF
201: IGAVASAAAY GIAKVVQA
001: MSSEEDKITR ISIEPEKQTL LDHHTEKHFT AGEIVRDIII GVSDGLTVPF ALAAGLSGAN ASSSIVLTAG IAEVAAGAIS MGLGGYLAAK SEEDHYAREM
101: KREQEEIVAV PETEAAEVAE ILAQYGIEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG FIPLLPYMLI PHAMDAVVAS
201: VVITLFALFI FGYAKGHFTG SKPLRSAFET AFIGAIASAA AFCLAKVVQH
101: KREQEEIVAV PETEAAEVAE ILAQYGIEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG FIPLLPYMLI PHAMDAVVAS
201: VVITLFALFI FGYAKGHFTG SKPLRSAFET AFIGAIASAA AFCLAKVVQH
Arabidopsis Description
VIT1Vacuolar iron transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUA5]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.