Factsheet for Bra024856.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plastid 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012567.1-P
Bra013361.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01770.1	Bra012567.1-P	AT4G19030.1	21798944
AT2G01770.1	Bra013361.1-P	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17642	Canola	cytosol	67.6	99.41
Bra026634.1-P	Field mustard	cytosol, peroxisome, plasma membrane	87.2	87.2
AT2G01770.1	Thale cress	cytosol, peroxisome, plasma membrane	87.2	87.2
PGSC0003DMT400075781	Potato	plasma membrane	76.4	79.92
Solyc04g008060.2.1	Tomato	plasma membrane	76.4	79.92
KRH41739	Soybean	cytosol	74.0	76.45
KRH60441	Soybean	cytosol	75.2	76.11
VIT_01s0011g06000.t01	Wine grape	plasma membrane	71.2	72.65
VIT_01s0011g06010.t01	Wine grape	cytosol	68.4	69.8
Os09t0396900-02	Rice	plasma membrane	68.0	69.11
TraesCS7D01G413000.1	Wheat	cytosol, peroxisome, plasma membrane	66.8	68.16
TraesCS7A01G420900.1	Wheat	cytosol, peroxisome, plasma membrane	59.2	67.89
GSMUA_Achr7P12420_001	Banana	cytosol	68.4	67.59
EES12303	Sorghum	mitochondrion, nucleus, peroxisome	65.6	66.67
HORVU4Hr1G031840.1	Barley	cytosol	65.2	66.53
HORVU5Hr1G060370.2	Barley	cytosol	65.2	66.53
TraesCS5B01G202100.1	Wheat	cytosol	65.2	66.53
TraesCS5A01G203400.1	Wheat	cytosol	64.8	66.12
Zm00001d025623_P001	Maize	cytosol, peroxisome, plasma membrane	64.8	65.85
Zm00001d020395_P002	Maize	plasma membrane	66.0	65.74
GSMUA_Achr9P27290_001	Banana	cytosol	67.2	65.62
EER96705	Sorghum	cytosol	65.6	65.34
Os04t0463400-01	Rice	cytosol	65.6	65.08
TraesCS2B01G345300.1	Wheat	cytosol, peroxisome, plasma membrane	64.0	65.04
TraesCS2A01G336600.1	Wheat	cytosol, peroxisome, plasma membrane	64.0	65.04
TraesCS2D01G326300.1	Wheat	cytosol	63.6	64.11
TraesCS5D01G209900.2	Wheat	cytosol	64.8	63.28
HORVU7Hr1G097360.1	Barley	cytosol, endoplasmic reticulum, peroxisome	36.8	59.35
HORVU2Hr1G080870.6	Barley	mitochondrion, plastid	63.6	50.8
Zm00001d005715_P004	Maize	plasma membrane	65.2	42.45

Protein Annotations

EnsemblPlants:Bra024856.1	EnsemblPlants:Bra024856.1-P	EnsemblPlantsGene:Bra024856	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Ccc1_fam	ncoils:Coil	PANTHER:PTHR31851	PANTHER:PTHR31851:SF9	PFAM:PF01988	SEG:seg
TMHMM:TMhelix	UniParc:UPI000253F940	UniProt:M4E7V0	MapMan:24.2.12.1	MapMan:25.4.5.3	:

Description

AT2G01770 (E=2e-108) VIT1 | VIT1 (vacuolar iron transporter 1); iron ion transmembrane transporter

Coordinates

chrA06:-:23862562..23865481

Molecular Weight (calculated)

26751.3 Da

IEP (calculated)

4.847

GRAVY (calculated)

0.292

Length

250 amino acids

Sequence
(BLAST)

001: MSPGEDNITR ISIEPEKQSL LEHHAEKHFT AGEIVRDIII GVSDGLTVPF ALAAGLSGAN ASSSIILTAG IAEVAAGAIS MGLGGYLAAK SEADHYAREV
101: KREQEEIKTI PETEAAEVAE MLSDYGVEPR EYSPVVNALR KNPQAWVDFM MRFELGLEKP EPKRALQSAF TIAIAYVLGG FIPLFPYIFI PQAVDAVVAS
201: VVITLLSLFI FGYGKGHFTG SRPFKSAFET AFIGAVASAA AFCLAKVVQL

Best Arabidopsis Sequence Match ( AT2G01770.1 )
(BLAST)

001: MSSEEDKITR ISIEPEKQTL LDHHTEKHFT AGEIVRDIII GVSDGLTVPF ALAAGLSGAN ASSSIVLTAG IAEVAAGAIS MGLGGYLAAK SEEDHYAREM
101: KREQEEIVAV PETEAAEVAE ILAQYGIEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG FIPLLPYMLI PHAMDAVVAS
201: VVITLFALFI FGYAKGHFTG SKPLRSAFET AFIGAIASAA AFCLAKVVQH

Arabidopsis Description

VIT1Vacuolar iron transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUA5]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.