CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020395_P002	Maize	plasma membrane	95.22	95.22
Os09t0396900-02	Rice	plasma membrane	85.66	87.4
HORVU5Hr1G060370.2	Barley	cytosol	80.48	82.45
TraesCS5B01G202100.1	Wheat	cytosol	80.48	82.45
TraesCS5A01G203400.1	Wheat	cytosol	80.48	82.45
HORVU4Hr1G031840.1	Barley	cytosol	80.48	82.45
TraesCS5D01G209900.2	Wheat	cytosol	80.48	78.91
EES12303	Sorghum	mitochondrion, nucleus, peroxisome	70.92	72.36
VIT_01s0011g06000.t01	Wine grape	plasma membrane	69.72	71.43
GSMUA_Achr7P12420_001	Banana	cytosol	71.71	71.15
PGSC0003DMT400075781	Potato	plasma membrane	67.73	71.13
Solyc04g008060.2.1	Tomato	plasma membrane	67.73	71.13
VIT_01s0011g06010.t01	Wine grape	cytosol	68.92	70.61
CDY64568	Canola	cytosol, peroxisome, plasma membrane	68.92	69.2
Bra026634.1-P	Field mustard	cytosol, peroxisome, plasma membrane	68.92	69.2
KRH41739	Soybean	cytosol	66.14	68.59
AT2G01770.1	Thale cress	cytosol, peroxisome, plasma membrane	66.14	66.4
KRH60441	Soybean	cytosol	65.34	66.4
Bra024856.1-P	Field mustard	cytosol, peroxisome, plasma membrane	65.34	65.6
Zm00001d005715_P004	Maize	plasma membrane	97.21	63.54
CDY09418	Canola	plasma membrane	43.43	63.01
CDY17642	Canola	cytosol	42.23	62.35

Protein Annotations

MapMan:24.2.12.1	MapMan:25.4.5.3	EntrezGene:8056231	UniProt:C5XC44	InterPro:Ccc1_fam	ncoils:Coil
EnsemblPlants:EER96705	ProteinID:EER96705	ProteinID:EER96705.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005381
GO:GO:0005384	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0006810	GO:GO:0006880	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0019725	GO:GO:0030026	GO:GO:0034755	GO:GO:0071281	GO:GO:0071421
PFAM:PF01988	PANTHER:PTHR31851	PANTHER:PTHR31851:SF19	EnsemblPlantsGene:SORBI_3002G194600	unigene:Sbi.14275	TMHMM:TMhelix
UniParc:UPI0001A83B0C	RefSeq:XP_002460184.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:58236873..58239579

Molecular Weight (calculated)

26362.8 Da

IEP (calculated)

4.524

GRAVY (calculated)

0.316

Length

251 amino acids

Sequence
(BLAST)

001: MAALNGGKTF VQDEEKQQLL LEEHTEKHFT AGEVVRDIII GVSDGLTVPF ALAAGLSGAN ASSALVLTAG LAEVAAGAIS MGLGGYLAAK SEADHYNREL
101: QREQDEIDTV PDVEAAEIAD ILSQYGLGPS EYGPVVTSLR NNPKAWLEFM MKFELGLEKP EPRRALVSAA TIALSYVAGG LVPLLPYMIV PEAGRAMAVS
201: VAVTLAALLF FGFVKGRFTG DRPFFSAVQT TVVGALASAA AYAMARAVQS I

Best Arabidopsis Sequence Match ( AT2G01770.1 )
(BLAST)

001: MSSEEDKITR ISIEPEKQTL LDHHTEKHFT AGEIVRDIII GVSDGLTVPF ALAAGLSGAN ASSSIVLTAG IAEVAAGAIS MGLGGYLAAK SEEDHYAREM
101: KREQEEIVAV PETEAAEVAE ILAQYGIEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG FIPLLPYMLI PHAMDAVVAS
201: VVITLFALFI FGYAKGHFTG SKPLRSAFET AFIGAIASAA AFCLAKVVQH

Arabidopsis Description

VIT1Vacuolar iron transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUA5]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.