Factsheet for HORVU4Hr1G031840.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
golgi 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01770.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G060370.2	Barley	cytosol	100.0	100.0
TraesCS5B01G202100.1	Wheat	cytosol	99.18	99.18
TraesCS5A01G203400.1	Wheat	cytosol	98.78	98.78
TraesCS5D01G209900.2	Wheat	cytosol	99.18	94.92
Os09t0396900-02	Rice	plasma membrane	86.94	86.59
Zm00001d020395_P002	Maize	plasma membrane	82.45	80.48
EER96705	Sorghum	cytosol	82.45	80.48
VIT_01s0011g06000.t01	Wine grape	plasma membrane	73.88	73.88
Solyc04g008060.2.1	Tomato	plasma membrane	71.84	73.64
PGSC0003DMT400075781	Potato	plasma membrane	71.84	73.64
GSMUA_Achr7P12420_001	Banana	cytosol	73.47	71.15
VIT_01s0011g06010.t01	Wine grape	cytosol	70.2	70.2
KRH41739	Soybean	cytosol	68.98	69.83
KRH60441	Soybean	cytosol	69.39	68.83
HORVU7Hr1G097360.1	Barley	cytosol, endoplasmic reticulum, peroxisome	42.86	67.74
CDY64568	Canola	cytosol, peroxisome, plasma membrane	68.98	67.6
Bra026634.1-P	Field mustard	cytosol, peroxisome, plasma membrane	68.98	67.6
AT2G01770.1	Thale cress	cytosol, peroxisome, plasma membrane	67.35	66.0
Bra024856.1-P	Field mustard	cytosol, peroxisome, plasma membrane	66.53	65.2
CDY17642	Canola	cytosol	44.49	64.12
CDY09418	Canola	plasma membrane	44.08	62.43
HORVU2Hr1G080870.6	Barley	mitochondrion, plastid	74.69	58.47
Zm00001d005715_P004	Maize	plasma membrane	83.27	53.12

Protein Annotations

EMBL:AK354754	EnsemblPlants:HORVU4Hr1G031840.1	EnsemblPlantsGene:HORVU4Hr1G031840	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Ccc1_fam	PANTHER:PTHR31851	PANTHER:PTHR31851:SF19	PFAM:PF01988	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002004EDD	UniProt:F2CT02	MapMan:24.2.12.1	MapMan:25.4.5.3	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CT02]

Coordinates

chrchr4H:+:213294947..213297660

Molecular Weight (calculated)

25954.2 Da

IEP (calculated)

4.442

GRAVY (calculated)

0.242

Length

245 amino acids

Sequence
(BLAST)

001: MVKPVQDEEN QRLLLDDHKE KHFTSGEVVR DIIIGVSDGL TVPFALAAGL SGANASSSLV LTAGLAEVAA GAISMGLGGY LAAKSDADHY YRELQREQDE
101: IDTVPDTEAA EIADILSEYG LGPEEYGPVV TSLRNNPKAW LEFMMKFELG LEKPDPRRAL TSAATIALAY VVGGMVPLSP YMFVASVDSA MMTSVVVTLA
201: ALLFFGYVKG RFTGNRPFLS AIQTAIIGAL ASSAAYGMAK AVQAV

Best Arabidopsis Sequence Match ( AT1G76800.1 )
(BLAST)

001: MDQSGSNTNM DIEKESTTFD YSKRSQWLRA AVLGANDGLV STASLMMGVG AVKHDVKAMI LSGFAGMVAG ACSMAIGEFV SVYSQYDIEV AQMERDSVEI
101: EKEKLPSPMQ AAAASALAFS AGAIVPLLAA AFVKEYKMRI ISVVVAVTVA LMVFGWLGAA LGKAPAVRSS ARVLFGGWLA MAVTFGLTKL IGLYGL

Arabidopsis Description

Vacuolar iron transporter homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRD3]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.