Factsheet for GSMUA_Achr7P12420_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01770.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P27290_001	Banana	cytosol	78.26	77.34
Os09t0396900-02	Rice	plasma membrane	73.12	75.2
VIT_01s0011g06000.t01	Wine grape	plasma membrane	72.33	74.69
VIT_01s0011g06010.t01	Wine grape	cytosol	72.33	74.69
TraesCS5A01G203400.1	Wheat	cytosol	71.54	73.88
Solyc04g008060.2.1	Tomato	plasma membrane	69.57	73.64
PGSC0003DMT400075781	Potato	plasma membrane	69.57	73.64
HORVU5Hr1G060370.2	Barley	cytosol	71.15	73.47
TraesCS5B01G202100.1	Wheat	cytosol	71.15	73.47
HORVU4Hr1G031840.1	Barley	cytosol	71.15	73.47
CDY64568	Canola	cytosol, peroxisome, plasma membrane	71.15	72.0
Bra026634.1-P	Field mustard	cytosol, peroxisome, plasma membrane	71.15	72.0
KRH41739	Soybean	cytosol	68.77	71.9
EER96705	Sorghum	cytosol	71.15	71.71
CDY09418	Canola	plasma membrane	49.01	71.68
AT2G01770.1	Thale cress	cytosol, peroxisome, plasma membrane	70.75	71.6
Zm00001d020395_P002	Maize	plasma membrane	70.75	71.31
KRH60441	Soybean	cytosol	68.77	70.45
CDY17642	Canola	cytosol	47.04	70.0
TraesCS5D01G209900.2	Wheat	cytosol	70.75	69.92
Bra024856.1-P	Field mustard	cytosol, peroxisome, plasma membrane	67.59	68.4
Zm00001d005715_P004	Maize	plasma membrane	71.15	46.88

Protein Annotations

EnsemblPlants:GSMUA_Achr7P12420_001	EnsemblPlants:GSMUA_Achr7T12420_001	EnsemblPlantsGene:GSMUA_Achr7G12420_001	GO:GO:0003674	GO:GO:0005215	GO:GO:0005381
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	InterPro:Ccc1_fam
ncoils:Coil	PANTHER:PTHR31851	PANTHER:PTHR31851:SF19	PFAM:PF01988	SEG:seg	TMHMM:TMhelix
UniParc:UPI000295E70E	UniProt:M0TGY0	MapMan:24.2.12.1	MapMan:25.4.5.3	:	:

Description

integral membrane protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G12420_001]

Coordinates

chr7:+:9914987..9916834

Molecular Weight (calculated)

26751.3 Da

IEP (calculated)

4.660

GRAVY (calculated)

0.302

Length

253 amino acids

Sequence
(BLAST)

001: MAPEESWEVN GTSTTPSTAE KLLVHHKENH FTAGEVVRDV ILGVSDGLTV PFALAAGLSG ANAPSSLILT AGLAEVAAGA ISMGLGGYLA AKSEADHYMR
101: ELKREQEEIV TVPDIEAAEI GEILAQYGLE PHEYSPVVNA LRNNPQAWLD FMMKFELGLE KPDPKRALQS ALTIALSYVV GGLVPLLPYV FIPIAQKAML
201: TSIGVTLAAL LFFGYVKGQF TGNYPLSSAV QTAFIGALAS AAAYAMAKVI QST

Best Arabidopsis Sequence Match ( AT2G01770.1 )
(BLAST)

001: MSSEEDKITR ISIEPEKQTL LDHHTEKHFT AGEIVRDIII GVSDGLTVPF ALAAGLSGAN ASSSIVLTAG IAEVAAGAIS MGLGGYLAAK SEEDHYAREM
101: KREQEEIVAV PETEAAEVAE ILAQYGIEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG FIPLLPYMLI PHAMDAVVAS
201: VVITLFALFI FGYAKGHFTG SKPLRSAFET AFIGAIASAA AFCLAKVVQH

Arabidopsis Description

VIT1Vacuolar iron transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUA5]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.