Factsheet for GSMUA_Achr9P27290_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
golgi 1
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01770.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P12420_001	Banana	cytosol	77.34	78.26
EES12303	Sorghum	mitochondrion, nucleus, peroxisome	73.44	76.42
Os04t0463400-01	Rice	cytosol	74.22	75.4
Zm00001d025623_P001	Maize	cytosol, peroxisome, plasma membrane	72.27	75.2
TraesCS2B01G345300.1	Wheat	cytosol, peroxisome, plasma membrane	71.88	74.8
TraesCS2A01G336600.1	Wheat	cytosol, peroxisome, plasma membrane	71.88	74.8
TraesCS7D01G413000.1	Wheat	cytosol, peroxisome, plasma membrane	71.48	74.69
TraesCS2D01G326300.1	Wheat	cytosol	71.88	74.19
TraesCS7A01G420900.1	Wheat	cytosol, peroxisome, plasma membrane	62.5	73.39
PGSC0003DMT400075781	Potato	plasma membrane	68.36	73.22
Solyc04g008060.2.1	Tomato	plasma membrane	68.36	73.22
VIT_01s0011g06000.t01	Wine grape	plasma membrane	69.53	72.65
VIT_01s0011g06010.t01	Wine grape	cytosol	68.36	71.43
KRH41739	Soybean	cytosol	67.19	71.07
HORVU7Hr1G097360.1	Barley	cytosol, endoplasmic reticulum, peroxisome	42.58	70.32
KRH60441	Soybean	cytosol	67.19	69.64
CDY17642	Canola	cytosol	46.09	69.41
CDY64568	Canola	cytosol, peroxisome, plasma membrane	67.19	68.8
Bra026634.1-P	Field mustard	cytosol, peroxisome, plasma membrane	67.19	68.8
CDY09418	Canola	plasma membrane	46.48	68.79
Bra024856.1-P	Field mustard	cytosol, peroxisome, plasma membrane	65.62	67.2
AT2G01770.1	Thale cress	cytosol, peroxisome, plasma membrane	65.23	66.8
HORVU2Hr1G080870.6	Barley	mitochondrion, plastid	71.88	58.79

Protein Annotations

EnsemblPlants:GSMUA_Achr9P27290_001	EnsemblPlants:GSMUA_Achr9T27290_001	EnsemblPlantsGene:GSMUA_Achr9G27290_001	GO:GO:0003674	GO:GO:0005215	GO:GO:0005381
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	InterPro:Ccc1_fam
ncoils:Coil	PANTHER:PTHR31851	PANTHER:PTHR31851:SF19	PFAM:PF01988	SEG:seg	TMHMM:TMhelix
UniParc:UPI00029683ED	UniProt:M0U3Y6	MapMan:24.2.12.1	MapMan:25.4.5.3	:	:

Description

integral membrane protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G27290_001]

Coordinates

chr9:-:31506206..31507434

Molecular Weight (calculated)

27114.8 Da

IEP (calculated)

5.085

GRAVY (calculated)

0.284

Length

256 amino acids

Sequence
(BLAST)

001: MAPEDGWAVG RTTSSSSSPV ATEKLLAQHK EKHFTAGDMV RDVIMGVSDG LTVPFALAAG LSGANAPSSL ILTAGFAEVA AGAISMGLGG YLAAKSEADH
101: YMRELNREQE EIITVPDTEA AEVGELLSQY GLEPHEYGPI VNSLRKKPQA WLEFMMKFEL GLEKPDPRRA LESAVTIAVS YVVGGMVPLL PYVFIPTALQ
201: AMFTSIGLTL VALLFFGYIK GRFTGNRPFL SAVQTAFIGA LASAAAYALA KAVQAV

Best Arabidopsis Sequence Match ( AT2G01770.1 )
(BLAST)

001: MSSEEDKITR ISIEPEKQTL LDHHTEKHFT AGEIVRDIII GVSDGLTVPF ALAAGLSGAN ASSSIVLTAG IAEVAAGAIS MGLGGYLAAK SEEDHYAREM
101: KREQEEIVAV PETEAAEVAE ILAQYGIEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG FIPLLPYMLI PHAMDAVVAS
201: VVITLFALFI FGYAKGHFTG SKPLRSAFET AFIGAIASAA AFCLAKVVQH

Arabidopsis Description

VIT1Vacuolar iron transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUA5]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.