CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
nucleus 1
mitochondrion 2
peroxisome 1
plastid 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0048g01070.t01	Wine grape	nucleus, peroxisome, plasma membrane	60.9	61.36
Solyc01g091850.2.1	Tomato	cytosol, peroxisome, plasma membrane	56.02	56.23
PGSC0003DMT400000004	Potato	plasma membrane	55.64	55.43
KRH41739	Soybean	cytosol	22.56	24.79
KRH60441	Soybean	cytosol	22.93	24.7

Protein Annotations

EntrezGene:100776858	MapMan:24.2.12.1	MapMan:25.4.5.3	EMBL:ACUP02011467	InterPro:Ccc1_fam	EnsemblPlantsGene:GLYMA_18G228200
GO:GO:0003674	GO:GO:0005215	GO:GO:0005381	GO:GO:0005384	GO:GO:0005575	GO:GO:0005623
GO:GO:0006810	GO:GO:0006880	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0019725	GO:GO:0030026	GO:GO:0034755	GO:GO:0071281	GO:GO:0071421	UniProt:K7MU65
EnsemblPlants:KRH00672	ProteinID:KRH00672	ProteinID:KRH00672.1	PFAM:PF01988	PANTHER:PTHR31851	PANTHER:PTHR31851:SF4
TMHMM:TMhelix	UniParc:UPI000233EC82	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:51733003..51735807

Molecular Weight (calculated)

28645.7 Da

IEP (calculated)

4.690

GRAVY (calculated)

0.268

Length

266 amino acids

Sequence
(BLAST)

001: MGERGGSSGG TTTRLLQTAA EDGGERKSER PKEPWKGEYV KSMVFAGLDA IITCFSLISS ISASTSSSVH VLVLGVSNLV ADAISMGFGD FVSASSEQDV
101: IIEERRVTEW DVINQRDKEQ TELVKHYQNL GMDYNDATMV VNIFTKYNDI LVDQRMVADK GMLPADQEVK PWRNGLVTFA SFMLFGSTPL LSFIILIPFT
201: DNDSVKFLSA CIVSALALAL LGVAKARIAG QNIMLSAAVT LLCGAIAAAS AYLVGWLLKL MAGLES

Best Arabidopsis Sequence Match ( AT2G01770.1 )
(BLAST)

001: MSSEEDKITR ISIEPEKQTL LDHHTEKHFT AGEIVRDIII GVSDGLTVPF ALAAGLSGAN ASSSIVLTAG IAEVAAGAIS MGLGGYLAAK SEEDHYAREM
101: KREQEEIVAV PETEAAEVAE ILAQYGIEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG FIPLLPYMLI PHAMDAVVAS
201: VVITLFALFI FGYAKGHFTG SKPLRSAFET AFIGAIASAA AFCLAKVVQH

Arabidopsis Description

VIT1Vacuolar iron transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUA5]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.