Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 6
- endoplasmic reticulum 5
- vacuole 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034700.1-P | Field mustard | extracellular | 99.05 | 99.05 |
| CDY23571 | Canola | extracellular | 97.14 | 97.14 |
| AT3G13175.1 | Thale cress | extracellular | 85.71 | 84.91 |
| CDX68671 | Canola | extracellular, plasma membrane, vacuole | 83.81 | 83.81 |
| CDY43365 | Canola | extracellular, plasma membrane, vacuole | 78.1 | 77.36 |
| CDY24206 | Canola | mitochondrion | 83.81 | 62.86 |
| KRH73903 | Soybean | endoplasmic reticulum, plasma membrane | 40.0 | 44.68 |
| VIT_19s0015g00340.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 44.76 | 39.5 |
| KRG98516 | Soybean | extracellular | 35.24 | 38.14 |
| CDY34463 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 31.43 | 37.5 |
| KRH46356 | Soybean | extracellular, plasma membrane | 34.29 | 37.11 |
| CDY09698 | Canola | nucleus | 28.57 | 16.3 |
| CDY42534 | Canola | cytosol | 28.57 | 15.38 |
| CDX90528 | Canola | golgi, peroxisome, plastid | 28.57 | 14.78 |
| CDY32240 | Canola | cytosol, peroxisome, plasma membrane | 28.57 | 13.82 |
| CDY34462 | Canola | nucleus | 6.67 | 7.29 |
| CDY22764 | Canola | cytosol | 6.67 | 5.6 |
Protein Annotations
| EnsemblPlants:CDY44017 | EnsemblPlantsGene:GSBRNA2T00079422001 | GO:A0A078I1R5 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR34125 | ProteinID:CDY44017 | ProteinID:CDY44017.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EEFD76 |
| UniProt:A0A078I1R5 | MapMan:35.2 | : | : | : | : |
Description
BnaA05g26120DBnaA05g26120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1R5]
Coordinates
chrLK032576:+:200336..200768
Molecular Weight (calculated)
11608.0 Da
IEP (calculated)
4.400
GRAVY (calculated)
0.736
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFREKLLKF KLQIVFTFVF SFVTVALVTY SPGFLTVVSY FWPLVLSTAL FLAAVFFFAR TSDLPTSSTL SGDGSGLIVA AEGILDYVVG GQHEESLFDS
101: FTKLD
101: FTKLD
001: MEFREKLLKF KLQIVFAFVL SLLTVALVAY SPGFLTVLSY FWPLFLSTAL FLAAVFFFAR TSDLPVSSTI IPGEGAGLKV AAEGILDYVV GGQHEDILFD
101: SFTKLD
101: SFTKLD
Arabidopsis Description
At3g13171 [Source:UniProtKB/TrEMBL;Acc:Q9LK55]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.