Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039375.1-P | Field mustard | extracellular, plasma membrane, vacuole | 99.06 | 99.06 |
| CDX68671 | Canola | extracellular, plasma membrane, vacuole | 86.79 | 87.62 |
| AT3G13175.1 | Thale cress | extracellular | 78.3 | 78.3 |
| CDY23571 | Canola | extracellular | 77.36 | 78.1 |
| CDY44017 | Canola | extracellular, plasma membrane, vacuole | 77.36 | 78.1 |
| CDY24206 | Canola | mitochondrion | 86.79 | 65.71 |
| KRH73903 | Soybean | endoplasmic reticulum, plasma membrane | 43.4 | 48.94 |
| KRH46356 | Soybean | extracellular, plasma membrane | 40.57 | 44.33 |
| KRG98516 | Soybean | extracellular | 39.62 | 43.3 |
| VIT_19s0015g00340.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 47.17 | 42.02 |
| CDY34463 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 33.02 | 39.77 |
| CDY09698 | Canola | nucleus | 32.08 | 18.48 |
| CDY42534 | Canola | cytosol | 32.08 | 17.44 |
| CDX90528 | Canola | golgi, peroxisome, plastid | 31.13 | 16.26 |
| CDY32240 | Canola | cytosol, peroxisome, plasma membrane | 33.02 | 16.13 |
| CDY22764 | Canola | cytosol | 7.55 | 6.4 |
| CDY34462 | Canola | nucleus | 5.66 | 6.25 |
Protein Annotations
| EnsemblPlants:CDY43365 | EnsemblPlantsGene:GSBRNA2T00076433001 | GO:A0A078HXU8 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR34125 | ProteinID:CDY43365 | ProteinID:CDY43365.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EEF259 |
| UniProt:A0A078HXU8 | MapMan:35.2 | : | : | : | : |
Description
BnaA01g29960DBnaA01g29960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXU8]
Coordinates
chrLK032554:+:75338..76204
Molecular Weight (calculated)
11763.2 Da
IEP (calculated)
4.179
GRAVY (calculated)
0.697
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFREKLLQF KFHIVFAFLF SLLIAALVTF SPGFLTVLSY FWPLFLSTAL FLAAVFFFAR TSDLPTSSTI SSDGSGVKLA AEGILDYVVG GQEEESDLLD
101: SFTKLD
101: SFTKLD
001: MEFREKLLKF KLQIVFAFVL SLLTVALVAY SPGFLTVLSY FWPLFLSTAL FLAAVFFFAR TSDLPVSSTI IPGEGAGLKV AAEGILDYVV GGQHEDILFD
101: SFTKLD
101: SFTKLD
Arabidopsis Description
At3g13171 [Source:UniProtKB/TrEMBL;Acc:Q9LK55]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.