Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 6
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH46356 | Soybean | extracellular, plasma membrane | 85.57 | 85.57 |
| KRH73903 | Soybean | endoplasmic reticulum, plasma membrane | 51.55 | 53.19 |
| KRH11575 | Soybean | plasma membrane | 42.27 | 42.27 |
| KRH36587 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 42.27 | 42.27 |
| Bra039375.1-P | Field mustard | extracellular, plasma membrane, vacuole | 43.3 | 39.62 |
| CDY43365 | Canola | extracellular, plasma membrane, vacuole | 43.3 | 39.62 |
| CDX68671 | Canola | extracellular, plasma membrane, vacuole | 42.27 | 39.05 |
| AT3G13175.1 | Thale cress | extracellular | 42.27 | 38.68 |
| KRH01967 | Soybean | endoplasmic reticulum, extracellular | 37.11 | 37.5 |
| KRH51184 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 37.11 | 37.5 |
| VIT_19s0015g00340.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 45.36 | 36.97 |
| Bra034700.1-P | Field mustard | extracellular | 38.14 | 35.24 |
| CDY23571 | Canola | extracellular | 38.14 | 35.24 |
| CDY44017 | Canola | extracellular, plasma membrane, vacuole | 38.14 | 35.24 |
| CDY24206 | Canola | mitochondrion | 42.27 | 29.29 |
Protein Annotations
| EMBL:ACUP02010893 | EnsemblPlants:KRG98516 | EnsemblPlantsGene:GLYMA_18G078100 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR34125 | ProteinID:KRG98516 | ProteinID:KRG98516.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000233E101 |
| UniProt:A0A0R0F963 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr18:+:7456993..7459469
Molecular Weight (calculated)
10977.4 Da
IEP (calculated)
6.800
GRAVY (calculated)
0.449
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MEIQQQLLKF RYHIGVALLV SLSVFSVLHF APRFLNILAY FWPLFLSTAL FLALVLFFAK TQTSLNSDAS LPKPAEELLD FVAGHHHDPP LDAHKSD
001: MGNCIHTLLC KHGNKVTDVW SDDEASTEKI KESPQDAAEQ KKTGTRRCIK ITLTRKQLEQ LLQQNPQGVS FQRKWKPSLQ TIVEKILWLL ICKVTALVME
101: FLDSTSLHFS PLSLTKFNHK EMEIQAKLME YRFHFMVTIM VSVIVASLVY AAPRILNILA YFWPLFASTA AFLAMAITFG GFQQLSEEAT GERLMDYVAG
201: RPEDSHKNNL RDDIEATT
101: FLDSTSLHFS PLSLTKFNHK EMEIQAKLME YRFHFMVTIM VSVIVASLVY AAPRILNILA YFWPLFASTA AFLAMAITFG GFQQLSEEAT GERLMDYVAG
201: RPEDSHKNNL RDDIEATT
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G16400]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.