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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 6
  • golgi 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra012567.1-P
Bra012880.1-P
Bra013361.1-P
Bra030034.1-P
Bra032817.1-P
Bra036850.1-P
Bra041043.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G13175.1 Bra030034.1-P AT1G27300.1 21798944
AT3G13175.1 Bra032817.1-P AT1G27300.1 21798944
AT3G13175.1 Bra041043.1-P AT2G20130.1 21798944
AT3G13175.1 Bra012880.1-P AT3G50910.1 21798944
AT3G13175.1 Bra036850.1-P AT3G50910.1 21798944
AT3G13175.1 Bra012567.1-P AT4G19030.1 21798944
AT3G13175.1 Bra013361.1-P AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY44017 Canola extracellular, plasma membrane, vacuole 99.05 99.05
AT3G13175.1 Thale cress extracellular 85.71 84.91
Bra039375.1-P Field mustard extracellular, plasma membrane, vacuole 78.1 77.36
KRH73903 Soybean endoplasmic reticulum, plasma membrane 40.0 44.68
VIT_19s0015g00340.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 44.76 39.5
KRG98516 Soybean extracellular 35.24 38.14
KRH46356 Soybean extracellular, plasma membrane 34.29 37.11
Bra012723.1-P Field mustard extracellular 28.57 35.29
Bra038456.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 28.57 34.09
Bra040577.1-P Field mustard cytosol 29.52 15.58
Protein Annotations
EnsemblPlants:Bra034700.1EnsemblPlants:Bra034700.1-PEnsemblPlantsGene:Bra034700GO:GO:0005575GO:GO:0016020GO:GO:0016021
PANTHER:PTHR34125SEG:segTMHMM:TMhelixUniParc:UPI0002548095UniProt:M4F0V5MapMan:35.2
Description
AT3G13175 (E=2e-026) | unknown protein
Coordinates
chrA05:+:21042476..21042793
Molecular Weight (calculated)
11622.1 Da
IEP (calculated)
4.400
GRAVY (calculated)
0.737
Length
105 amino acids
Sequence
(BLAST)
001: MEFREKLLKF KLQIVFTFVF SFVTVALVTY SPGFLTVVSY FWPLVLSTAL FLAAVFFFAR TSDLPTSSTL SGDGSGLIVA AEGILDYVVG GQHEETLFDS
101: FTKLD
Best Arabidopsis Sequence Match ( AT3G13175.1 )
(BLAST)
001: MEFREKLLKF KLQIVFAFVL SLLTVALVAY SPGFLTVLSY FWPLFLSTAL FLAAVFFFAR TSDLPVSSTI IPGEGAGLKV AAEGILDYVV GGQHEDILFD
101: SFTKLD
Arabidopsis Description
At3g13171 [Source:UniProtKB/TrEMBL;Acc:Q9LK55]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.